Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16997 | 5' | -60.5 | NC_004333.2 | + | 7840 | 0.68 | 0.28247 |
Target: 5'- aGAUCGAC---GCGGCCUGCGcCgGCCa -3' miRNA: 3'- -UUAGCUGuucCGCCGGGCGCaG-CGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 23927 | 0.66 | 0.384627 |
Target: 5'- -uUCGAC-GGGCGGCacaCCGUGgaaGCCu -3' miRNA: 3'- uuAGCUGuUCCGCCG---GGCGCag-CGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 46224 | 1.07 | 0.000386 |
Target: 5'- aAAUCGACAAGGCGGCCCGCGUCGCCGg -3' miRNA: 3'- -UUAGCUGUUCCGCCGGGCGCAGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 16882 | 0.73 | 0.143715 |
Target: 5'- cGUCGGCGcaGGuGCGGCCgGUcUCGCCGg -3' miRNA: 3'- uUAGCUGU--UC-CGCCGGgCGcAGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 27415 | 0.73 | 0.143715 |
Target: 5'- uGUCGACGuucAGGCGcGCagCCGCGUCGgCGa -3' miRNA: 3'- uUAGCUGU---UCCGC-CG--GGCGCAGCgGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 24038 | 0.7 | 0.208381 |
Target: 5'- -cUCGugAAGGCGGCCgcgaacauUGCG-CGCUGc -3' miRNA: 3'- uuAGCugUUCCGCCGG--------GCGCaGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 34233 | 0.7 | 0.2133 |
Target: 5'- aAGUCGcCAAGGCGGCCacgcugGCGgcagcggccacgaUCGCCa -3' miRNA: 3'- -UUAGCuGUUCCGCCGGg-----CGC-------------AGCGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 17024 | 0.66 | 0.384627 |
Target: 5'- --gCGAugcCAAGGCGGgCgGCGaugcauUCGCCGg -3' miRNA: 3'- uuaGCU---GUUCCGCCgGgCGC------AGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 7380 | 0.67 | 0.350734 |
Target: 5'- cAUCGACGGGGCGaGCgacaugaCGCGU-GCCu -3' miRNA: 3'- uUAGCUGUUCCGC-CGg------GCGCAgCGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 17704 | 0.67 | 0.350734 |
Target: 5'- -cUCGACAAGGUaGGCgcagCCGUGaCGUCGa -3' miRNA: 3'- uuAGCUGUUCCG-CCG----GGCGCaGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 44956 | 0.67 | 0.3426 |
Target: 5'- --cCGGCGucaucgGGGCGGgCgGCG-CGCCGg -3' miRNA: 3'- uuaGCUGU------UCCGCCgGgCGCaGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 17877 | 0.67 | 0.3426 |
Target: 5'- uGUCGcaggcGCGAcGGCGGCCaGC-UCGCCGu -3' miRNA: 3'- uUAGC-----UGUU-CCGCCGGgCGcAGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 41248 | 0.67 | 0.3426 |
Target: 5'- -uUCGACu-GGC-GCCCGCGcaCGCCu -3' miRNA: 3'- uuAGCUGuuCCGcCGGGCGCa-GCGGc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 23976 | 0.67 | 0.3426 |
Target: 5'- --gCGGCcAGGCGGCCgGUaccGUCGCa- -3' miRNA: 3'- uuaGCUGuUCCGCCGGgCG---CAGCGgc -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 28236 | 0.68 | 0.280386 |
Target: 5'- -cUCGAC--GGCGGCUCGCcgcccggcgcgcucGUCGUCGa -3' miRNA: 3'- uuAGCUGuuCCGCCGGGCG--------------CAGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 10259 | 0.69 | 0.268807 |
Target: 5'- --aCGACGcAGGCaGUuuGgCGUCGCCGa -3' miRNA: 3'- uuaGCUGU-UCCGcCGggC-GCAGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 16006 | 0.69 | 0.262178 |
Target: 5'- -cUCGGCGAguaagcgcguGGcCGGCCUGCcgacaGUCGCCGc -3' miRNA: 3'- uuAGCUGUU----------CC-GCCGGGCG-----CAGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 21723 | 0.69 | 0.243087 |
Target: 5'- cGAUCcACAAGGCGGCCagGuCGgcaCGCCGc -3' miRNA: 3'- -UUAGcUGUUCCGCCGGg-C-GCa--GCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 34337 | 0.7 | 0.231013 |
Target: 5'- -cUCGACGcGGC-GCCCGUcgucgaaccGUCGCCGu -3' miRNA: 3'- uuAGCUGUuCCGcCGGGCG---------CAGCGGC- -5' |
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16997 | 5' | -60.5 | NC_004333.2 | + | 33174 | 0.7 | 0.225167 |
Target: 5'- cGUCGGCGucGGCGGCCCGCuaa-CCGg -3' miRNA: 3'- uUAGCUGUu-CCGCCGGGCGcagcGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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