miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16998 3' -53.6 NC_004333.2 + 20207 0.68 0.657417
Target:  5'- -uGGGCGcgGCUCGCGcuuucgugGCGGCgaucgacCGCg -3'
miRNA:   3'- gcUCCGCuaCGAGCGCa-------UGUUGa------GCG- -5'
16998 3' -53.6 NC_004333.2 + 11514 0.68 0.668538
Target:  5'- aCGAGGCGcUGCgaagGCGU-CAugUCGa -3'
miRNA:   3'- -GCUCCGCuACGag--CGCAuGUugAGCg -5'
16998 3' -53.6 NC_004333.2 + 28738 0.68 0.668538
Target:  5'- gGAGGCGcugGCacgCGCGUG-AACgUCGCg -3'
miRNA:   3'- gCUCCGCua-CGa--GCGCAUgUUG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 29980 0.68 0.679623
Target:  5'- ---uGCGAUGCcgCGCGcACGACgagCGCa -3'
miRNA:   3'- gcucCGCUACGa-GCGCaUGUUGa--GCG- -5'
16998 3' -53.6 NC_004333.2 + 17051 0.68 0.679623
Target:  5'- --uGGCGucAUGCUCGCGguguucCAGC-CGCg -3'
miRNA:   3'- gcuCCGC--UACGAGCGCau----GUUGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 9246 0.67 0.700547
Target:  5'- gGGGGCGccucGC-CGCGUGCGGCauagccuUCGUg -3'
miRNA:   3'- gCUCCGCua--CGaGCGCAUGUUG-------AGCG- -5'
16998 3' -53.6 NC_004333.2 + 19632 0.67 0.701643
Target:  5'- gCGAGcGCGGccgacGCUgGcCGUcaACAGCUCGCc -3'
miRNA:   3'- -GCUC-CGCUa----CGAgC-GCA--UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 41305 0.67 0.712554
Target:  5'- aCGAGGcCGA-GCUCGCc--CGGCgCGCg -3'
miRNA:   3'- -GCUCC-GCUaCGAGCGcauGUUGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 42081 0.67 0.712554
Target:  5'- aCGAGGauaGcgucGUGCUgCGCGacgagGCGugUCGCg -3'
miRNA:   3'- -GCUCCg--C----UACGA-GCGCa----UGUugAGCG- -5'
16998 3' -53.6 NC_004333.2 + 5145 0.67 0.723384
Target:  5'- -cGGGCGAgccGCcCGUGUugucgagcagcGCAGCUUGCg -3'
miRNA:   3'- gcUCCGCUa--CGaGCGCA-----------UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 11855 0.67 0.73412
Target:  5'- cCGuAGGCGAUGCgaCGCccgGCGACUacucgggcggCGCg -3'
miRNA:   3'- -GC-UCCGCUACGa-GCGca-UGUUGA----------GCG- -5'
16998 3' -53.6 NC_004333.2 + 21629 0.67 0.73412
Target:  5'- aGAccGGCGcggGCUC-CGUGCAGUUCGCc -3'
miRNA:   3'- gCU--CCGCua-CGAGcGCAUGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 47498 0.67 0.73412
Target:  5'- aCGAGGCGccgGCcggCGCGaccagUACAuugaaugcACUCGCc -3'
miRNA:   3'- -GCUCCGCua-CGa--GCGC-----AUGU--------UGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 16160 0.67 0.744752
Target:  5'- uGGGGCGA-GUUCGaugucaaGUACGAgUaCGCg -3'
miRNA:   3'- gCUCCGCUaCGAGCg------CAUGUUgA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 24592 0.67 0.744752
Target:  5'- gGuGGaUGAUGCUCgGCG-GCGGCUuCGCu -3'
miRNA:   3'- gCuCC-GCUACGAG-CGCaUGUUGA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 45101 0.66 0.755266
Target:  5'- gCGAGGCGAUaCUCGaCGccugucugcGCGGCgaUCGCg -3'
miRNA:   3'- -GCUCCGCUAcGAGC-GCa--------UGUUG--AGCG- -5'
16998 3' -53.6 NC_004333.2 + 37322 0.66 0.755266
Target:  5'- uCGcGGCGGUGCUCGaCGcGCucgaaucuGCgUCGCc -3'
miRNA:   3'- -GCuCCGCUACGAGC-GCaUGu-------UG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 27544 0.66 0.755266
Target:  5'- cCGuuGCGAcGCUCGCGUcgaauuggccCGACUgCGCg -3'
miRNA:   3'- -GCucCGCUaCGAGCGCAu---------GUUGA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 18808 0.66 0.764618
Target:  5'- -cGGGCGAcgagccGCUugaagugCGCGUGCGACagCGCa -3'
miRNA:   3'- gcUCCGCUa-----CGA-------GCGCAUGUUGa-GCG- -5'
16998 3' -53.6 NC_004333.2 + 44391 0.66 0.765651
Target:  5'- --cGGCGgcGCgugCGCGgUACAacggccugccggGCUCGCu -3'
miRNA:   3'- gcuCCGCuaCGa--GCGC-AUGU------------UGAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.