miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16998 3' -53.6 NC_004333.2 + 42040 0.8 0.142451
Target:  5'- gCGGGGCG-UGCUCGCcgaaaGCGACUCGUa -3'
miRNA:   3'- -GCUCCGCuACGAGCGca---UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 47498 0.67 0.73412
Target:  5'- aCGAGGCGccgGCcggCGCGaccagUACAuugaaugcACUCGCc -3'
miRNA:   3'- -GCUCCGCua-CGa--GCGC-----AUGU--------UGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 37322 0.66 0.755266
Target:  5'- uCGcGGCGGUGCUCGaCGcGCucgaaucuGCgUCGCc -3'
miRNA:   3'- -GCuCCGCUACGAGC-GCaUGu-------UG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 32394 0.66 0.805662
Target:  5'- uCGGGGUucucGGUGUcggcccgcgccUCGC--GCAGCUCGCu -3'
miRNA:   3'- -GCUCCG----CUACG-----------AGCGcaUGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 40868 0.71 0.482775
Target:  5'- --cGGCGAUGgUCGC--GCGACUCGg -3'
miRNA:   3'- gcuCCGCUACgAGCGcaUGUUGAGCg -5'
16998 3' -53.6 NC_004333.2 + 45899 0.71 0.482775
Target:  5'- aCGAGGCGcucucgagGUGCUugccgagcuggcCGCGUugcgcgagaaGCAGCUCGUc -3'
miRNA:   3'- -GCUCCGC--------UACGA------------GCGCA----------UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 2859 0.7 0.546566
Target:  5'- gCGuuGCGgcGUUCGCGaACGACgUCGCa -3'
miRNA:   3'- -GCucCGCuaCGAGCGCaUGUUG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 18187 0.68 0.646273
Target:  5'- -cGGGUGAUGCgcucgucgUGCGcGCGGCaUCGCa -3'
miRNA:   3'- gcUCCGCUACGa-------GCGCaUGUUG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 17051 0.68 0.679623
Target:  5'- --uGGCGucAUGCUCGCGguguucCAGC-CGCg -3'
miRNA:   3'- gcuCCGC--UACGAGCGCau----GUUGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 5145 0.67 0.723384
Target:  5'- -cGGGCGAgccGCcCGUGUugucgagcagcGCAGCUUGCg -3'
miRNA:   3'- gcUCCGCUa--CGaGCGCA-----------UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 19632 0.67 0.701643
Target:  5'- gCGAGcGCGGccgacGCUgGcCGUcaACAGCUCGCc -3'
miRNA:   3'- -GCUC-CGCUa----CGAgC-GCA--UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 11514 0.68 0.668538
Target:  5'- aCGAGGCGcUGCgaagGCGU-CAugUCGa -3'
miRNA:   3'- -GCUCCGCuACGag--CGCAuGUugAGCg -5'
16998 3' -53.6 NC_004333.2 + 37541 0.72 0.422793
Target:  5'- cCGGuGCGcUGCUCGUGcguCAGCUCGCc -3'
miRNA:   3'- -GCUcCGCuACGAGCGCau-GUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 41305 0.67 0.712554
Target:  5'- aCGAGGcCGA-GCUCGCc--CGGCgCGCg -3'
miRNA:   3'- -GCUCC-GCUaCGAGCGcauGUUGaGCG- -5'
16998 3' -53.6 NC_004333.2 + 41734 0.72 0.452241
Target:  5'- aCGAGGaGAUcggCGCGgGCGACUCGCg -3'
miRNA:   3'- -GCUCCgCUAcgaGCGCaUGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 20207 0.68 0.657417
Target:  5'- -uGGGCGcgGCUCGCGcuuucgugGCGGCgaucgacCGCg -3'
miRNA:   3'- gcUCCGCuaCGAGCGCa-------UGUUGa------GCG- -5'
16998 3' -53.6 NC_004333.2 + 42081 0.67 0.712554
Target:  5'- aCGAGGauaGcgucGUGCUgCGCGacgagGCGugUCGCg -3'
miRNA:   3'- -GCUCCg--C----UACGA-GCGCa----UGUugAGCG- -5'
16998 3' -53.6 NC_004333.2 + 45101 0.66 0.755266
Target:  5'- gCGAGGCGAUaCUCGaCGccugucugcGCGGCgaUCGCg -3'
miRNA:   3'- -GCUCCGCUAcGAGC-GCa--------UGUUG--AGCG- -5'
16998 3' -53.6 NC_004333.2 + 33396 0.71 0.472483
Target:  5'- aGAacGGCGAUGCcUGCGgcgcaGCGACUgCGCg -3'
miRNA:   3'- gCU--CCGCUACGaGCGCa----UGUUGA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 42309 0.71 0.514268
Target:  5'- cCGAGGCGua--UCGCGUGCuguuGCagCGCg -3'
miRNA:   3'- -GCUCCGCuacgAGCGCAUGu---UGa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.