Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16998 | 3' | -53.6 | NC_004333.2 | + | 38254 | 0.74 | 0.358793 |
Target: 5'- gCGcGGCGAccUGCUCGUGUGgGACggucaCGCg -3' miRNA: 3'- -GCuCCGCU--ACGAGCGCAUgUUGa----GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 29980 | 0.68 | 0.679623 |
Target: 5'- ---uGCGAUGCcgCGCGcACGACgagCGCa -3' miRNA: 3'- gcucCGCUACGa-GCGCaUGUUGa--GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 28738 | 0.68 | 0.668538 |
Target: 5'- gGAGGCGcugGCacgCGCGUG-AACgUCGCg -3' miRNA: 3'- gCUCCGCua-CGa--GCGCAUgUUG-AGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 19143 | 0.68 | 0.646273 |
Target: 5'- gCGGcGCGGUGCUCGCGcugguuaucgUGCuAGC-CGCg -3' miRNA: 3'- -GCUcCGCUACGAGCGC----------AUG-UUGaGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 9860 | 0.68 | 0.646273 |
Target: 5'- uCGAGGCGcauuucgccgGUcGC-CGCGUGCAcGgUCGCg -3' miRNA: 3'- -GCUCCGC----------UA-CGaGCGCAUGU-UgAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 4575 | 0.69 | 0.623955 |
Target: 5'- cCGGGuaGCGAuucuUGCUCGCGc---ACUCGCg -3' miRNA: 3'- -GCUC--CGCU----ACGAGCGCauguUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 1255 | 0.7 | 0.540051 |
Target: 5'- gCGAGGCuucgcGgcGCUCGCGgcgcUGCAgcaugaacagcaggcGCUCGCg -3' miRNA: 3'- -GCUCCG-----CuaCGAGCGC----AUGU---------------UGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 41599 | 0.7 | 0.524953 |
Target: 5'- uGGcGGCGAUGCgggcuuucgCGCGUACGcgcGC-CGCu -3' miRNA: 3'- gCU-CCGCUACGa--------GCGCAUGU---UGaGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 32294 | 0.72 | 0.432482 |
Target: 5'- aCGAuGGCGGUcacggcggcucGCUCGCGg---GCUCGCa -3' miRNA: 3'- -GCU-CCGCUA-----------CGAGCGCauguUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 21629 | 0.67 | 0.73412 |
Target: 5'- aGAccGGCGcggGCUC-CGUGCAGUUCGCc -3' miRNA: 3'- gCU--CCGCua-CGAGcGCAUGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 11855 | 0.67 | 0.73412 |
Target: 5'- cCGuAGGCGAUGCgaCGCccgGCGACUacucgggcggCGCg -3' miRNA: 3'- -GC-UCCGCUACGa-GCGca-UGUUGA----------GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 16160 | 0.67 | 0.744752 |
Target: 5'- uGGGGCGA-GUUCGaugucaaGUACGAgUaCGCg -3' miRNA: 3'- gCUCCGCUaCGAGCg------CAUGUUgA-GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 7425 | 0.66 | 0.785985 |
Target: 5'- ---cGCGAUGCgcucgaucagcaUCGCGUucaggaGCGACUUGCc -3' miRNA: 3'- gcucCGCUACG------------AGCGCA------UGUUGAGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 35408 | 0.66 | 0.785985 |
Target: 5'- gCGaAGGCGAgaUUCGCGUcugguACGACUaCGUg -3' miRNA: 3'- -GC-UCCGCUacGAGCGCA-----UGUUGA-GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 40008 | 0.66 | 0.785985 |
Target: 5'- uGAGuacGCGAUGgaCGCGgcCGACcugUCGCc -3' miRNA: 3'- gCUC---CGCUACgaGCGCauGUUG---AGCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 36052 | 0.66 | 0.775894 |
Target: 5'- aCGAcGGCGA-GCUCGU--GCcGCUCGg -3' miRNA: 3'- -GCU-CCGCUaCGAGCGcaUGuUGAGCg -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 4607 | 0.66 | 0.775894 |
Target: 5'- uCGAGGCGA-GCgCGCGacacgccauuaaUGCGAUcaggCGCg -3' miRNA: 3'- -GCUCCGCUaCGaGCGC------------AUGUUGa---GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 18808 | 0.66 | 0.764618 |
Target: 5'- -cGGGCGAcgagccGCUugaagugCGCGUGCGACagCGCa -3' miRNA: 3'- gcUCCGCUa-----CGA-------GCGCAUGUUGa-GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 27544 | 0.66 | 0.755266 |
Target: 5'- cCGuuGCGAcGCUCGCGUcgaauuggccCGACUgCGCg -3' miRNA: 3'- -GCucCGCUaCGAGCGCAu---------GUUGA-GCG- -5' |
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16998 | 3' | -53.6 | NC_004333.2 | + | 24592 | 0.67 | 0.744752 |
Target: 5'- gGuGGaUGAUGCUCgGCG-GCGGCUuCGCu -3' miRNA: 3'- gCuCC-GCUACGAG-CGCaUGUUGA-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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