miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 45221 0.67 0.326742
Target:  5'- gGGCGUcACGCUcGCGcAGCUGCagGGCu- -3'
miRNA:   3'- -CCGCGcUGCGA-CGU-UCGACGg-CCGca -5'
16999 3' -61 NC_004333.2 + 44434 0.67 0.326742
Target:  5'- uGGUGCG-UGCgagGCGcucGGcCUGCCGGUGc -3'
miRNA:   3'- -CCGCGCuGCGa--CGU---UC-GACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 3648 0.67 0.326742
Target:  5'- cGCGCGAagUGCUcgGGGUgaucgGCCGGCGUc -3'
miRNA:   3'- cCGCGCU--GCGAcgUUCGa----CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 40847 0.67 0.326742
Target:  5'- aGGCGCG-CGCcuucuGGUcGCCGGCGa -3'
miRNA:   3'- -CCGCGCuGCGacgu-UCGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 36266 0.67 0.326742
Target:  5'- cGCGCGcCGCUGCGca-UGCCGGg-- -3'
miRNA:   3'- cCGCGCuGCGACGUucgACGGCCgca -5'
16999 3' -61 NC_004333.2 + 9571 0.67 0.319019
Target:  5'- gGGCaGCGGCGC-GCccGGCUguaGCUGGCGc -3'
miRNA:   3'- -CCG-CGCUGCGaCGu-UCGA---CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 6980 0.67 0.319019
Target:  5'- uGGCGaucaGGuuuugaagUGCUGCGAGUUgGCCGGUGc -3'
miRNA:   3'- -CCGCg---CU--------GCGACGUUCGA-CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 29860 0.67 0.319019
Target:  5'- cGGCGUGAggaucgUGC-GCAcGCgcgUGCCGGCGa -3'
miRNA:   3'- -CCGCGCU------GCGaCGUuCG---ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 29971 0.67 0.311434
Target:  5'- aGCGCGgccGCGCUGCcaccGGC-GCCGaGCGc -3'
miRNA:   3'- cCGCGC---UGCGACGu---UCGaCGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 33299 0.67 0.311434
Target:  5'- cGGUGCugcuGACGCgccUGCAgcAGCUcuCCGGCGUc -3'
miRNA:   3'- -CCGCG----CUGCG---ACGU--UCGAc-GGCCGCA- -5'
16999 3' -61 NC_004333.2 + 10813 0.67 0.311434
Target:  5'- cGCGCGACGCggUGCAcgucGCguaGCCagGGCGa -3'
miRNA:   3'- cCGCGCUGCG--ACGUu---CGa--CGG--CCGCa -5'
16999 3' -61 NC_004333.2 + 30877 0.67 0.311434
Target:  5'- gGGCauGUcgagGACGCUGC--GCcgGCCGGCGUu -3'
miRNA:   3'- -CCG--CG----CUGCGACGuuCGa-CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 35524 0.67 0.311434
Target:  5'- aGUGCGAauugGCUGuUGAGCUGUgCGGCGg -3'
miRNA:   3'- cCGCGCUg---CGAC-GUUCGACG-GCCGCa -5'
16999 3' -61 NC_004333.2 + 42323 0.67 0.309934
Target:  5'- gGGCGUGGCG-UGCAuaaauaccgGCCGGCGc -3'
miRNA:   3'- -CCGCGCUGCgACGUucga-----CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 24668 0.67 0.303987
Target:  5'- aGGCGCGGUGCUGCAAagUGCCgacuuccucGGCa- -3'
miRNA:   3'- -CCGCGCUGCGACGUUcgACGG---------CCGca -5'
16999 3' -61 NC_004333.2 + 27607 0.67 0.303987
Target:  5'- aGCGCGGCGCcuucUGCAugccGUUGCCaGCa- -3'
miRNA:   3'- cCGCGCUGCG----ACGUu---CGACGGcCGca -5'
16999 3' -61 NC_004333.2 + 26538 0.67 0.303987
Target:  5'- aGGUGCGGCGaaCUGCAcggAGCccgcGCCGGUc- -3'
miRNA:   3'- -CCGCGCUGC--GACGU---UCGa---CGGCCGca -5'
16999 3' -61 NC_004333.2 + 455 0.68 0.296678
Target:  5'- aGGCcaCGGCGC-GCGAcgUGCCGGCGa -3'
miRNA:   3'- -CCGc-GCUGCGaCGUUcgACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 693 0.68 0.296678
Target:  5'- cGGCGCcucguucaGCGCgGCAGucGCcGCCGGCGc -3'
miRNA:   3'- -CCGCGc-------UGCGaCGUU--CGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 1287 0.68 0.296678
Target:  5'- uGGCGCG-CGUUGCGuuacGCgaUCGGCGUg -3'
miRNA:   3'- -CCGCGCuGCGACGUu---CGacGGCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.