miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 20572 0.66 0.366566
Target:  5'- cGGCGCGucgggucGCGCcgugguguuucUGCAGGCgcgGCuCGGCc- -3'
miRNA:   3'- -CCGCGC-------UGCG-----------ACGUUCGa--CG-GCCGca -5'
16999 3' -61 NC_004333.2 + 18818 0.66 0.359006
Target:  5'- gGGCGCG-UGCUGCuaucgAAGCccGCgCGGCa- -3'
miRNA:   3'- -CCGCGCuGCGACG-----UUCGa-CG-GCCGca -5'
16999 3' -61 NC_004333.2 + 30929 0.66 0.359006
Target:  5'- aGCGCGuccucAUGC-GCGGGCagGCCGGCu- -3'
miRNA:   3'- cCGCGC-----UGCGaCGUUCGa-CGGCCGca -5'
16999 3' -61 NC_004333.2 + 20465 0.66 0.350735
Target:  5'- cGGuCGUGACGCaGCcgguuAGCgucCCGGCGg -3'
miRNA:   3'- -CC-GCGCUGCGaCGu----UCGac-GGCCGCa -5'
16999 3' -61 NC_004333.2 + 5515 0.66 0.350735
Target:  5'- cGGCGC--UGUUGCGGGCUGCuCGaCGg -3'
miRNA:   3'- -CCGCGcuGCGACGUUCGACG-GCcGCa -5'
16999 3' -61 NC_004333.2 + 71 0.66 0.350735
Target:  5'- cGGCGCGguGCGC-GCGcccGGUUGCCGccuGCGc -3'
miRNA:   3'- -CCGCGC--UGCGaCGU---UCGACGGC---CGCa -5'
16999 3' -61 NC_004333.2 + 39129 0.66 0.350735
Target:  5'- cGGCGuCGACGUgucGCAGGUcGCCaaaGGCa- -3'
miRNA:   3'- -CCGC-GCUGCGa--CGUUCGaCGG---CCGca -5'
16999 3' -61 NC_004333.2 + 41589 0.66 0.350735
Target:  5'- cGGCGCGcCGUggcggcgaUGCGGGCUuUCGcGCGUa -3'
miRNA:   3'- -CCGCGCuGCG--------ACGUUCGAcGGC-CGCA- -5'
16999 3' -61 NC_004333.2 + 45181 0.66 0.350735
Target:  5'- cGGCG-GACGCgccgGCGAGCgucuaCGGCa- -3'
miRNA:   3'- -CCGCgCUGCGa---CGUUCGacg--GCCGca -5'
16999 3' -61 NC_004333.2 + 21504 0.66 0.350735
Target:  5'- uGGCGaccuGACGCUaucGGCaGCCGGCGc -3'
miRNA:   3'- -CCGCg---CUGCGAcguUCGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 16941 0.66 0.350735
Target:  5'- cGGCGCuGCGCcGCGcGGCcgucgcGCCGGCa- -3'
miRNA:   3'- -CCGCGcUGCGaCGU-UCGa-----CGGCCGca -5'
16999 3' -61 NC_004333.2 + 19299 0.67 0.3426
Target:  5'- aGCGCGAuCGCgcgGCAcgagcgcuugAGCgcGCCGGCu- -3'
miRNA:   3'- cCGCGCU-GCGa--CGU----------UCGa-CGGCCGca -5'
16999 3' -61 NC_004333.2 + 2969 0.67 0.3426
Target:  5'- aGCGUGACGCccgucaacggaaUGCcuagacGCUcGCCGGCGc -3'
miRNA:   3'- cCGCGCUGCG------------ACGuu----CGA-CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 16821 0.67 0.3426
Target:  5'- cGGCuGCGuCGCUcgGCAgcggucugaugaAGCUgGCCGGCa- -3'
miRNA:   3'- -CCG-CGCuGCGA--CGU------------UCGA-CGGCCGca -5'
16999 3' -61 NC_004333.2 + 27299 0.67 0.341794
Target:  5'- cGGCGaaaccgaUGAUGCgGcCAGGCUGCCagGGUGUa -3'
miRNA:   3'- -CCGC-------GCUGCGaC-GUUCGACGG--CCGCA- -5'
16999 3' -61 NC_004333.2 + 30665 0.67 0.334602
Target:  5'- aGUGCGACcgGCUGC-AGCagGUCGGUGc -3'
miRNA:   3'- cCGCGCUG--CGACGuUCGa-CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 3297 0.67 0.334602
Target:  5'- uGGCGCaGCGagucggGCAGGUUGUCGcGCGc -3'
miRNA:   3'- -CCGCGcUGCga----CGUUCGACGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 44394 0.67 0.334602
Target:  5'- cGGCGCGuGCGCgGUAcaacGGcCUGCCGGg-- -3'
miRNA:   3'- -CCGCGC-UGCGaCGU----UC-GACGGCCgca -5'
16999 3' -61 NC_004333.2 + 45221 0.67 0.326742
Target:  5'- gGGCGUcACGCUcGCGcAGCUGCagGGCu- -3'
miRNA:   3'- -CCGCGcUGCGA-CGU-UCGACGg-CCGca -5'
16999 3' -61 NC_004333.2 + 36266 0.67 0.326742
Target:  5'- cGCGCGcCGCUGCGca-UGCCGGg-- -3'
miRNA:   3'- cCGCGCuGCGACGUucgACGGCCgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.