miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 41529 0.66 0.367412
Target:  5'- aGCGCGcCGa-GCGcGCUGCCGaGCGc -3'
miRNA:   3'- cCGCGCuGCgaCGUuCGACGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 415 0.66 0.375953
Target:  5'- aGCGCGGCGaugUGCuuGGCacagucgGCCGGgGUg -3'
miRNA:   3'- cCGCGCUGCg--ACGu-UCGa------CGGCCgCA- -5'
16999 3' -61 NC_004333.2 + 12999 0.66 0.375953
Target:  5'- cGCGCaGGUuaUGCAA-CUGCCGGCGa -3'
miRNA:   3'- cCGCG-CUGcgACGUUcGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 39047 0.66 0.375953
Target:  5'- aGCGCGACG-UGCGuuacguGCUcGgCGGCGa -3'
miRNA:   3'- cCGCGCUGCgACGUu-----CGA-CgGCCGCa -5'
16999 3' -61 NC_004333.2 + 2987 0.66 0.383754
Target:  5'- uGGCGCGGacaGCUGCc-GCUGCgcaucagcaagcgCGGCc- -3'
miRNA:   3'- -CCGCGCUg--CGACGuuCGACG-------------GCCGca -5'
16999 3' -61 NC_004333.2 + 21633 0.66 0.383754
Target:  5'- cGGCGCGGgcuccgugcaguuCGCcGCAc-CUGUCGGCGc -3'
miRNA:   3'- -CCGCGCU-------------GCGaCGUucGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 45181 0.66 0.350735
Target:  5'- cGGCG-GACGCgccgGCGAGCgucuaCGGCa- -3'
miRNA:   3'- -CCGCgCUGCGa---CGUUCGacg--GCCGca -5'
16999 3' -61 NC_004333.2 + 41589 0.66 0.350735
Target:  5'- cGGCGCGcCGUggcggcgaUGCGGGCUuUCGcGCGUa -3'
miRNA:   3'- -CCGCGCuGCG--------ACGUUCGAcGGC-CGCA- -5'
16999 3' -61 NC_004333.2 + 39129 0.66 0.350735
Target:  5'- cGGCGuCGACGUgucGCAGGUcGCCaaaGGCa- -3'
miRNA:   3'- -CCGC-GCUGCGa--CGUUCGaCGG---CCGca -5'
16999 3' -61 NC_004333.2 + 5515 0.66 0.350735
Target:  5'- cGGCGC--UGUUGCGGGCUGCuCGaCGg -3'
miRNA:   3'- -CCGCGcuGCGACGUUCGACG-GCcGCa -5'
16999 3' -61 NC_004333.2 + 71 0.66 0.350735
Target:  5'- cGGCGCGguGCGC-GCGcccGGUUGCCGccuGCGc -3'
miRNA:   3'- -CCGCGC--UGCGaCGU---UCGACGGC---CGCa -5'
16999 3' -61 NC_004333.2 + 24668 0.67 0.303987
Target:  5'- aGGCGCGGUGCUGCAAagUGCCgacuuccucGGCa- -3'
miRNA:   3'- -CCGCGCUGCGACGUUcgACGG---------CCGca -5'
16999 3' -61 NC_004333.2 + 3648 0.67 0.326742
Target:  5'- cGCGCGAagUGCUcgGGGUgaucgGCCGGCGUc -3'
miRNA:   3'- cCGCGCU--GCGAcgUUCGa----CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 45221 0.67 0.326742
Target:  5'- gGGCGUcACGCUcGCGcAGCUGCagGGCu- -3'
miRNA:   3'- -CCGCGcUGCGA-CGU-UCGACGg-CCGca -5'
16999 3' -61 NC_004333.2 + 29860 0.67 0.319019
Target:  5'- cGGCGUGAggaucgUGC-GCAcGCgcgUGCCGGCGa -3'
miRNA:   3'- -CCGCGCU------GCGaCGUuCG---ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 9571 0.67 0.319019
Target:  5'- gGGCaGCGGCGC-GCccGGCUguaGCUGGCGc -3'
miRNA:   3'- -CCG-CGCUGCGaCGu-UCGA---CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 10813 0.67 0.311434
Target:  5'- cGCGCGACGCggUGCAcgucGCguaGCCagGGCGa -3'
miRNA:   3'- cCGCGCUGCG--ACGUu---CGa--CGG--CCGCa -5'
16999 3' -61 NC_004333.2 + 33299 0.67 0.311434
Target:  5'- cGGUGCugcuGACGCgccUGCAgcAGCUcuCCGGCGUc -3'
miRNA:   3'- -CCGCG----CUGCG---ACGU--UCGAc-GGCCGCA- -5'
16999 3' -61 NC_004333.2 + 30877 0.67 0.311434
Target:  5'- gGGCauGUcgagGACGCUGC--GCcgGCCGGCGUu -3'
miRNA:   3'- -CCG--CG----CUGCGACGuuCGa-CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 42323 0.67 0.309934
Target:  5'- gGGCGUGGCG-UGCAuaaauaccgGCCGGCGc -3'
miRNA:   3'- -CCGCGCUGCgACGUucga-----CGGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.