miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 27638 0.66 0.384627
Target:  5'- cGGCGCGGCcauGUUaCAGGCcGCCaGCGa -3'
miRNA:   3'- -CCGCGCUG---CGAcGUUCGaCGGcCGCa -5'
16999 3' -61 NC_004333.2 + 41589 0.66 0.350735
Target:  5'- cGGCGCGcCGUggcggcgaUGCGGGCUuUCGcGCGUa -3'
miRNA:   3'- -CCGCGCuGCG--------ACGUUCGAcGGC-CGCA- -5'
16999 3' -61 NC_004333.2 + 39129 0.66 0.350735
Target:  5'- cGGCGuCGACGUgucGCAGGUcGCCaaaGGCa- -3'
miRNA:   3'- -CCGC-GCUGCGa--CGUUCGaCGG---CCGca -5'
16999 3' -61 NC_004333.2 + 5515 0.66 0.350735
Target:  5'- cGGCGC--UGUUGCGGGCUGCuCGaCGg -3'
miRNA:   3'- -CCGCGcuGCGACGUUCGACG-GCcGCa -5'
16999 3' -61 NC_004333.2 + 21504 0.66 0.350735
Target:  5'- uGGCGaccuGACGCUaucGGCaGCCGGCGc -3'
miRNA:   3'- -CCGCg---CUGCGAcguUCGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 20465 0.66 0.350735
Target:  5'- cGGuCGUGACGCaGCcgguuAGCgucCCGGCGg -3'
miRNA:   3'- -CC-GCGCUGCGaCGu----UCGac-GGCCGCa -5'
16999 3' -61 NC_004333.2 + 18818 0.66 0.359006
Target:  5'- gGGCGCG-UGCUGCuaucgAAGCccGCgCGGCa- -3'
miRNA:   3'- -CCGCGCuGCGACG-----UUCGa-CG-GCCGca -5'
16999 3' -61 NC_004333.2 + 20572 0.66 0.366566
Target:  5'- cGGCGCGucgggucGCGCcgugguguuucUGCAGGCgcgGCuCGGCc- -3'
miRNA:   3'- -CCGCGC-------UGCG-----------ACGUUCGa--CG-GCCGca -5'
16999 3' -61 NC_004333.2 + 25307 0.66 0.367412
Target:  5'- gGGC-CGACGCcgGCGA-CUGCCGcGaCGUa -3'
miRNA:   3'- -CCGcGCUGCGa-CGUUcGACGGC-C-GCA- -5'
16999 3' -61 NC_004333.2 + 45181 0.66 0.350735
Target:  5'- cGGCG-GACGCgccgGCGAGCgucuaCGGCa- -3'
miRNA:   3'- -CCGCgCUGCGa---CGUUCGacg--GCCGca -5'
16999 3' -61 NC_004333.2 + 71 0.66 0.350735
Target:  5'- cGGCGCGguGCGC-GCGcccGGUUGCCGccuGCGc -3'
miRNA:   3'- -CCGCGC--UGCGaCGU---UCGACGGC---CGCa -5'
16999 3' -61 NC_004333.2 + 16941 0.66 0.350735
Target:  5'- cGGCGCuGCGCcGCGcGGCcgucgcGCCGGCa- -3'
miRNA:   3'- -CCGCGcUGCGaCGU-UCGa-----CGGCCGca -5'
16999 3' -61 NC_004333.2 + 21633 0.66 0.383754
Target:  5'- cGGCGCGGgcuccgugcaguuCGCcGCAc-CUGUCGGCGc -3'
miRNA:   3'- -CCGCGCU-------------GCGaCGUucGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 2987 0.66 0.383754
Target:  5'- uGGCGCGGacaGCUGCc-GCUGCgcaucagcaagcgCGGCc- -3'
miRNA:   3'- -CCGCGCUg--CGACGuuCGACG-------------GCCGca -5'
16999 3' -61 NC_004333.2 + 39047 0.66 0.375953
Target:  5'- aGCGCGACG-UGCGuuacguGCUcGgCGGCGa -3'
miRNA:   3'- cCGCGCUGCgACGUu-----CGA-CgGCCGCa -5'
16999 3' -61 NC_004333.2 + 12999 0.66 0.375953
Target:  5'- cGCGCaGGUuaUGCAA-CUGCCGGCGa -3'
miRNA:   3'- cCGCG-CUGcgACGUUcGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 415 0.66 0.375953
Target:  5'- aGCGCGGCGaugUGCuuGGCacagucgGCCGGgGUg -3'
miRNA:   3'- cCGCGCUGCg--ACGu-UCGa------CGGCCgCA- -5'
16999 3' -61 NC_004333.2 + 41529 0.66 0.367412
Target:  5'- aGCGCGcCGa-GCGcGCUGCCGaGCGc -3'
miRNA:   3'- cCGCGCuGCgaCGUuCGACGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 25817 0.66 0.367412
Target:  5'- cGGCGCG-UGCggcGCAGGUUucGUCGGCu- -3'
miRNA:   3'- -CCGCGCuGCGa--CGUUCGA--CGGCCGca -5'
16999 3' -61 NC_004333.2 + 30929 0.66 0.359006
Target:  5'- aGCGCGuccucAUGC-GCGGGCagGCCGGCu- -3'
miRNA:   3'- cCGCGC-----UGCGaCGUUCGa-CGGCCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.