miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 9605 0.82 0.024271
Target:  5'- cGGCGCGGCaucggccgGUUGCGcaccGGCUGCCGGCGg -3'
miRNA:   3'- -CCGCGCUG--------CGACGU----UCGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 13121 0.7 0.213853
Target:  5'- cGGCaucGCGA-GCUGCGucauGCugaUGCCGGCGa -3'
miRNA:   3'- -CCG---CGCUgCGACGUu---CG---ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 31244 0.7 0.221721
Target:  5'- cGCGCGGCGCagcgccgucucggugUucgucaguGCAAGCaccaUGCCGGCGa -3'
miRNA:   3'- cCGCGCUGCG---------------A--------CGUUCG----ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 20975 0.66 0.393432
Target:  5'- cGCGCGGCGCggGCGAGUgggUGCguuucgaGcGCGUg -3'
miRNA:   3'- cCGCGCUGCGa-CGUUCG---ACGg------C-CGCA- -5'
16999 3' -61 NC_004333.2 + 20313 0.72 0.136132
Target:  5'- cGCGaCGugGUUGcCAGGCuUGCCGGcCGUg -3'
miRNA:   3'- cCGC-GCugCGAC-GUUCG-ACGGCC-GCA- -5'
16999 3' -61 NC_004333.2 + 5068 0.72 0.136132
Target:  5'- cGGCGCGGCGCUGaacAGCgucaGCaGGUGUg -3'
miRNA:   3'- -CCGCGCUGCGACgu-UCGa---CGgCCGCA- -5'
16999 3' -61 NC_004333.2 + 8924 0.72 0.147649
Target:  5'- uGCGCGACGCgGCuucguucGC-GCCGGCGc -3'
miRNA:   3'- cCGCGCUGCGaCGuu-----CGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 25405 0.72 0.155814
Target:  5'- cGGCGagcGCGcCUGC-AGCgUGCCGGCGg -3'
miRNA:   3'- -CCGCgc-UGC-GACGuUCG-ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 1144 0.71 0.178037
Target:  5'- cGCGCGACGUUGCA--CUGCauauccgaucgCGGCGg -3'
miRNA:   3'- cCGCGCUGCGACGUucGACG-----------GCCGCa -5'
16999 3' -61 NC_004333.2 + 39186 0.7 0.208381
Target:  5'- uGCGCG-CGCUGCAccGGCaGCaCGGCc- -3'
miRNA:   3'- cCGCGCuGCGACGU--UCGaCG-GCCGca -5'
16999 3' -61 NC_004333.2 + 47923 0.71 0.182807
Target:  5'- uGGCuGCGAuucuggUGCUauucgGCAAGCUGCuCGGCGc -3'
miRNA:   3'- -CCG-CGCU------GCGA-----CGUUCGACG-GCCGCa -5'
16999 3' -61 NC_004333.2 + 13884 0.71 0.168828
Target:  5'- cGCGCGAagucgGCcgGCAcgGGCUGCgCGGCGg -3'
miRNA:   3'- cCGCGCUg----CGa-CGU--UCGACG-GCCGCa -5'
16999 3' -61 NC_004333.2 + 46481 0.78 0.04977
Target:  5'- uGCGCGACuauuacaaagGCUGCAAGCgcGCCGGUGg -3'
miRNA:   3'- cCGCGCUG----------CGACGUUCGa-CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 28889 0.7 0.187689
Target:  5'- cGCGCGAuCGC-GCucGGCgcagGCCGGCGc -3'
miRNA:   3'- cCGCGCU-GCGaCGu-UCGa---CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 8649 0.73 0.125445
Target:  5'- cGGCGCGGCGCccgGCuuGCUcgugacggugccGUCGGCGUu -3'
miRNA:   3'- -CCGCGCUGCGa--CGuuCGA------------CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 31115 0.71 0.160048
Target:  5'- cGGCGCGAguUGCUGCucGCgcgcgaGCCcGGCGa -3'
miRNA:   3'- -CCGCGCU--GCGACGuuCGa-----CGG-CCGCa -5'
16999 3' -61 NC_004333.2 + 363 0.7 0.20303
Target:  5'- cGGCGCuuuGAacaGCUGCAGGCcgacagaguUGCCGaGCGc -3'
miRNA:   3'- -CCGCG---CUg--CGACGUUCG---------ACGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 37698 0.7 0.221721
Target:  5'- cGGCGCGugGCggcucaauggccugcUcgaugucgGCAAGCUGCCGcGCc- -3'
miRNA:   3'- -CCGCGCugCG---------------A--------CGUUCGACGGC-CGca -5'
16999 3' -61 NC_004333.2 + 25728 0.73 0.13248
Target:  5'- cGC-CGGCcaGCUGCAGGCcgGUCGGCGUg -3'
miRNA:   3'- cCGcGCUG--CGACGUUCGa-CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 42108 0.72 0.143715
Target:  5'- aGGCGUGuCGCgaggUGCGccAGUUGCCGGUGc -3'
miRNA:   3'- -CCGCGCuGCG----ACGU--UCGACGGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.