Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16999 | 3' | -61 | NC_004333.2 | + | 36266 | 0.67 | 0.326742 |
Target: 5'- cGCGCGcCGCUGCGca-UGCCGGg-- -3' miRNA: 3'- cCGCGCuGCGACGUucgACGGCCgca -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 41589 | 0.66 | 0.350735 |
Target: 5'- cGGCGCGcCGUggcggcgaUGCGGGCUuUCGcGCGUa -3' miRNA: 3'- -CCGCGCuGCG--------ACGUUCGAcGGC-CGCA- -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 39129 | 0.66 | 0.350735 |
Target: 5'- cGGCGuCGACGUgucGCAGGUcGCCaaaGGCa- -3' miRNA: 3'- -CCGC-GCUGCGa--CGUUCGaCGG---CCGca -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 5515 | 0.66 | 0.350735 |
Target: 5'- cGGCGC--UGUUGCGGGCUGCuCGaCGg -3' miRNA: 3'- -CCGCGcuGCGACGUUCGACG-GCcGCa -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 21504 | 0.66 | 0.350735 |
Target: 5'- uGGCGaccuGACGCUaucGGCaGCCGGCGc -3' miRNA: 3'- -CCGCg---CUGCGAcguUCGaCGGCCGCa -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 19299 | 0.67 | 0.3426 |
Target: 5'- aGCGCGAuCGCgcgGCAcgagcgcuugAGCgcGCCGGCu- -3' miRNA: 3'- cCGCGCU-GCGa--CGU----------UCGa-CGGCCGca -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 16821 | 0.67 | 0.3426 |
Target: 5'- cGGCuGCGuCGCUcgGCAgcggucugaugaAGCUgGCCGGCa- -3' miRNA: 3'- -CCG-CGCuGCGA--CGU------------UCGA-CGGCCGca -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 30665 | 0.67 | 0.334602 |
Target: 5'- aGUGCGACcgGCUGC-AGCagGUCGGUGc -3' miRNA: 3'- cCGCGCUG--CGACGuUCGa-CGGCCGCa -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 3297 | 0.67 | 0.334602 |
Target: 5'- uGGCGCaGCGagucggGCAGGUUGUCGcGCGc -3' miRNA: 3'- -CCGCGcUGCga----CGUUCGACGGC-CGCa -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 45181 | 0.66 | 0.350735 |
Target: 5'- cGGCG-GACGCgccgGCGAGCgucuaCGGCa- -3' miRNA: 3'- -CCGCgCUGCGa---CGUUCGacg--GCCGca -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 71 | 0.66 | 0.350735 |
Target: 5'- cGGCGCGguGCGC-GCGcccGGUUGCCGccuGCGc -3' miRNA: 3'- -CCGCGC--UGCGaCGU---UCGACGGC---CGCa -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 16941 | 0.66 | 0.350735 |
Target: 5'- cGGCGCuGCGCcGCGcGGCcgucgcGCCGGCa- -3' miRNA: 3'- -CCGCGcUGCGaCGU-UCGa-----CGGCCGca -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 21633 | 0.66 | 0.383754 |
Target: 5'- cGGCGCGGgcuccgugcaguuCGCcGCAc-CUGUCGGCGc -3' miRNA: 3'- -CCGCGCU-------------GCGaCGUucGACGGCCGCa -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 2987 | 0.66 | 0.383754 |
Target: 5'- uGGCGCGGacaGCUGCc-GCUGCgcaucagcaagcgCGGCc- -3' miRNA: 3'- -CCGCGCUg--CGACGuuCGACG-------------GCCGca -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 39047 | 0.66 | 0.375953 |
Target: 5'- aGCGCGACG-UGCGuuacguGCUcGgCGGCGa -3' miRNA: 3'- cCGCGCUGCgACGUu-----CGA-CgGCCGCa -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 12999 | 0.66 | 0.375953 |
Target: 5'- cGCGCaGGUuaUGCAA-CUGCCGGCGa -3' miRNA: 3'- cCGCG-CUGcgACGUUcGACGGCCGCa -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 415 | 0.66 | 0.375953 |
Target: 5'- aGCGCGGCGaugUGCuuGGCacagucgGCCGGgGUg -3' miRNA: 3'- cCGCGCUGCg--ACGu-UCGa------CGGCCgCA- -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 41529 | 0.66 | 0.367412 |
Target: 5'- aGCGCGcCGa-GCGcGCUGCCGaGCGc -3' miRNA: 3'- cCGCGCuGCgaCGUuCGACGGC-CGCa -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 25817 | 0.66 | 0.367412 |
Target: 5'- cGGCGCG-UGCggcGCAGGUUucGUCGGCu- -3' miRNA: 3'- -CCGCGCuGCGa--CGUUCGA--CGGCCGca -5' |
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16999 | 3' | -61 | NC_004333.2 | + | 30929 | 0.66 | 0.359006 |
Target: 5'- aGCGCGuccucAUGC-GCGGGCagGCCGGCu- -3' miRNA: 3'- cCGCGC-----UGCGaCGUUCGa-CGGCCGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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