miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 71 0.66 0.350735
Target:  5'- cGGCGCGguGCGC-GCGcccGGUUGCCGccuGCGc -3'
miRNA:   3'- -CCGCGC--UGCGaCGU---UCGACGGC---CGCa -5'
16999 3' -61 NC_004333.2 + 363 0.7 0.20303
Target:  5'- cGGCGCuuuGAacaGCUGCAGGCcgacagaguUGCCGaGCGc -3'
miRNA:   3'- -CCGCG---CUg--CGACGUUCG---------ACGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 415 0.66 0.375953
Target:  5'- aGCGCGGCGaugUGCuuGGCacagucgGCCGGgGUg -3'
miRNA:   3'- cCGCGCUGCg--ACGu-UCGa------CGGCCgCA- -5'
16999 3' -61 NC_004333.2 + 455 0.68 0.296678
Target:  5'- aGGCcaCGGCGC-GCGAcgUGCCGGCGa -3'
miRNA:   3'- -CCGc-GCUGCGaCGUUcgACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 693 0.68 0.296678
Target:  5'- cGGCGCcucguucaGCGCgGCAGucGCcGCCGGCGc -3'
miRNA:   3'- -CCGCGc-------UGCGaCGUU--CGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 1144 0.71 0.178037
Target:  5'- cGCGCGACGUUGCA--CUGCauauccgaucgCGGCGg -3'
miRNA:   3'- cCGCGCUGCGACGUucGACG-----------GCCGCa -5'
16999 3' -61 NC_004333.2 + 1231 0.68 0.281774
Target:  5'- cGGCGCG-CGCcGCcuuGGCUGCgcgcgaggcuucgCGGCGc -3'
miRNA:   3'- -CCGCGCuGCGaCGu--UCGACG-------------GCCGCa -5'
16999 3' -61 NC_004333.2 + 1287 0.68 0.296678
Target:  5'- uGGCGCG-CGUUGCGuuacGCgaUCGGCGUg -3'
miRNA:   3'- -CCGCGCuGCGACGUu---CGacGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 2969 0.67 0.3426
Target:  5'- aGCGUGACGCccgucaacggaaUGCcuagacGCUcGCCGGCGc -3'
miRNA:   3'- cCGCGCUGCG------------ACGuu----CGA-CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 2987 0.66 0.383754
Target:  5'- uGGCGCGGacaGCUGCc-GCUGCgcaucagcaagcgCGGCc- -3'
miRNA:   3'- -CCGCGCUg--CGACGuuCGACG-------------GCCGca -5'
16999 3' -61 NC_004333.2 + 3297 0.67 0.334602
Target:  5'- uGGCGCaGCGagucggGCAGGUUGUCGcGCGc -3'
miRNA:   3'- -CCGCGcUGCga----CGUUCGACGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 3648 0.67 0.326742
Target:  5'- cGCGCGAagUGCUcgGGGUgaucgGCCGGCGUc -3'
miRNA:   3'- cCGCGCU--GCGAcgUUCGa----CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 3923 0.66 0.393432
Target:  5'- cGGCaGCGGCG--GCAGGCcGaCCGGCa- -3'
miRNA:   3'- -CCG-CGCUGCgaCGUUCGaC-GGCCGca -5'
16999 3' -61 NC_004333.2 + 4169 0.68 0.275571
Target:  5'- aGCGCGcCGC-GCucguGCUGCagCGGCGUg -3'
miRNA:   3'- cCGCGCuGCGaCGuu--CGACG--GCCGCA- -5'
16999 3' -61 NC_004333.2 + 5068 0.72 0.136132
Target:  5'- cGGCGCGGCGCUGaacAGCgucaGCaGGUGUg -3'
miRNA:   3'- -CCGCGCUGCGACgu-UCGa---CGgCCGCA- -5'
16999 3' -61 NC_004333.2 + 5515 0.66 0.350735
Target:  5'- cGGCGC--UGUUGCGGGCUGCuCGaCGg -3'
miRNA:   3'- -CCGCGcuGCGACGUUCGACG-GCcGCa -5'
16999 3' -61 NC_004333.2 + 6642 0.72 0.143715
Target:  5'- -uCGCGACGCUGaCGAugUGCCGGUGUu -3'
miRNA:   3'- ccGCGCUGCGAC-GUUcgACGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 6980 0.67 0.319019
Target:  5'- uGGCGaucaGGuuuugaagUGCUGCGAGUUgGCCGGUGc -3'
miRNA:   3'- -CCGCg---CU--------GCGACGUUCGA-CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 7427 0.67 0.326742
Target:  5'- cGCGCGGCGCccaGAGCUGCacgagaCGGCc- -3'
miRNA:   3'- cCGCGCUGCGacgUUCGACG------GCCGca -5'
16999 3' -61 NC_004333.2 + 7648 0.68 0.275571
Target:  5'- aGCGCGACGaCUucguucacgaccGCuucGaCUGCCGGCGa -3'
miRNA:   3'- cCGCGCUGC-GA------------CGuu-C-GACGGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.