miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 8649 0.73 0.125445
Target:  5'- cGGCGCGGCGCccgGCuuGCUcgugacggugccGUCGGCGUu -3'
miRNA:   3'- -CCGCGCUGCGa--CGuuCGA------------CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 8915 0.68 0.28247
Target:  5'- cGCGCG-CGCgUGCGc-CUGCCGGCc- -3'
miRNA:   3'- cCGCGCuGCG-ACGUucGACGGCCGca -5'
16999 3' -61 NC_004333.2 + 8924 0.72 0.147649
Target:  5'- uGCGCGACGCgGCuucguucGC-GCCGGCGc -3'
miRNA:   3'- cCGCGCUGCGaCGuu-----CGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 8995 0.69 0.236986
Target:  5'- cGGCGacCGACGCgGCGuucgcGGCuUGCCaGGCGg -3'
miRNA:   3'- -CCGC--GCUGCGaCGU-----UCG-ACGG-CCGCa -5'
16999 3' -61 NC_004333.2 + 9571 0.67 0.319019
Target:  5'- gGGCaGCGGCGC-GCccGGCUguaGCUGGCGc -3'
miRNA:   3'- -CCG-CGCUGCGaCGu-UCGA---CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 9605 0.82 0.024271
Target:  5'- cGGCGCGGCaucggccgGUUGCGcaccGGCUGCCGGCGg -3'
miRNA:   3'- -CCGCGCUG--------CGACGU----UCGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 10813 0.67 0.311434
Target:  5'- cGCGCGACGCggUGCAcgucGCguaGCCagGGCGa -3'
miRNA:   3'- cCGCGCUGCG--ACGUu---CGa--CGG--CCGCa -5'
16999 3' -61 NC_004333.2 + 11009 0.69 0.225168
Target:  5'- cGGCGUGucgccGCGCUGCGGGaUGCCGcacgugaucGCGUc -3'
miRNA:   3'- -CCGCGC-----UGCGACGUUCgACGGC---------CGCA- -5'
16999 3' -61 NC_004333.2 + 11210 0.66 0.384627
Target:  5'- cGCGCGcACGUgauucggGCGcGGCuccuUGCCGGCGc -3'
miRNA:   3'- cCGCGC-UGCGa------CGU-UCG----ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 11916 0.68 0.275571
Target:  5'- cGCGUGuCGCUGCAuGUcgugGCuCGGCGa -3'
miRNA:   3'- cCGCGCuGCGACGUuCGa---CG-GCCGCa -5'
16999 3' -61 NC_004333.2 + 12791 0.66 0.384627
Target:  5'- cGCuCGAUGCguuCAAGCcgGUCGGCGUg -3'
miRNA:   3'- cCGcGCUGCGac-GUUCGa-CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 12999 0.66 0.375953
Target:  5'- cGCGCaGGUuaUGCAA-CUGCCGGCGa -3'
miRNA:   3'- cCGCG-CUGcgACGUUcGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 13121 0.7 0.213853
Target:  5'- cGGCaucGCGA-GCUGCGucauGCugaUGCCGGCGa -3'
miRNA:   3'- -CCG---CGCUgCGACGUu---CG---ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 13537 0.66 0.375953
Target:  5'- -uCGCGGCGUUGCc----GCCGGCGg -3'
miRNA:   3'- ccGCGCUGCGACGuucgaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 13884 0.71 0.168828
Target:  5'- cGCGCGAagucgGCcgGCAcgGGCUGCgCGGCGg -3'
miRNA:   3'- cCGCGCUg----CGa-CGU--UCGACG-GCCGCa -5'
16999 3' -61 NC_004333.2 + 14727 0.78 0.051209
Target:  5'- cGGCGCGcCGCUGCcaauGCUGCCGGa-- -3'
miRNA:   3'- -CCGCGCuGCGACGuu--CGACGGCCgca -5'
16999 3' -61 NC_004333.2 + 15470 0.66 0.384627
Target:  5'- cGGCGCGcuugGCGUgccgagcGCAacagGGCUGCucgCGGCGg -3'
miRNA:   3'- -CCGCGC----UGCGa------CGU----UCGACG---GCCGCa -5'
16999 3' -61 NC_004333.2 + 16821 0.67 0.3426
Target:  5'- cGGCuGCGuCGCUcgGCAgcggucugaugaAGCUgGCCGGCa- -3'
miRNA:   3'- -CCG-CGCuGCGA--CGU------------UCGA-CGGCCGca -5'
16999 3' -61 NC_004333.2 + 16879 0.68 0.289506
Target:  5'- cGGCGuCGGCGCaggUGCGgccGGuCUcGCCGGCa- -3'
miRNA:   3'- -CCGC-GCUGCG---ACGU---UC-GA-CGGCCGca -5'
16999 3' -61 NC_004333.2 + 16941 0.66 0.350735
Target:  5'- cGGCGCuGCGCcGCGcGGCcgucgcGCCGGCa- -3'
miRNA:   3'- -CCGCGcUGCGaCGU-UCGa-----CGGCCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.