miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 22754 0.71 0.170635
Target:  5'- cGGCGUGAcggccgccgccggcaCGCUGCAGGCgcgcucGCCGGaUGg -3'
miRNA:   3'- -CCGCGCU---------------GCGACGUUCGa-----CGGCC-GCa -5'
16999 3' -61 NC_004333.2 + 19431 0.71 0.173378
Target:  5'- -aCGCGGCGCUcGCGcAGUUGCUGGCc- -3'
miRNA:   3'- ccGCGCUGCGA-CGU-UCGACGGCCGca -5'
16999 3' -61 NC_004333.2 + 35802 0.71 0.178037
Target:  5'- gGGCGgGGCGCggGCGGGCgcuaCGGCGc -3'
miRNA:   3'- -CCGCgCUGCGa-CGUUCGacg-GCCGCa -5'
16999 3' -61 NC_004333.2 + 1144 0.71 0.178037
Target:  5'- cGCGCGACGUUGCA--CUGCauauccgaucgCGGCGg -3'
miRNA:   3'- cCGCGCUGCGACGUucGACG-----------GCCGCa -5'
16999 3' -61 NC_004333.2 + 26433 0.71 0.178037
Target:  5'- uGGCGguugagcucguCGAacuuCGCUGCGucgAGCUGCUGGCGc -3'
miRNA:   3'- -CCGC-----------GCU----GCGACGU---UCGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 41649 0.71 0.182807
Target:  5'- gGGCGCGG-GCUGC-GGCcguacGCCGGCa- -3'
miRNA:   3'- -CCGCGCUgCGACGuUCGa----CGGCCGca -5'
16999 3' -61 NC_004333.2 + 47923 0.71 0.182807
Target:  5'- uGGCuGCGAuucuggUGCUauucgGCAAGCUGCuCGGCGc -3'
miRNA:   3'- -CCG-CGCU------GCGA-----CGUUCGACG-GCCGCa -5'
16999 3' -61 NC_004333.2 + 28889 0.7 0.187689
Target:  5'- cGCGCGAuCGC-GCucGGCgcagGCCGGCGc -3'
miRNA:   3'- cCGCGCU-GCGaCGu-UCGa---CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 25177 0.7 0.197283
Target:  5'- cGGCGUGuucCGCUuccugcucucgGCGAccgguaccgcgacGCUGCCGGCGg -3'
miRNA:   3'- -CCGCGCu--GCGA-----------CGUU-------------CGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 363 0.7 0.20303
Target:  5'- cGGCGCuuuGAacaGCUGCAGGCcgacagaguUGCCGaGCGc -3'
miRNA:   3'- -CCGCG---CUg--CGACGUUCG---------ACGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 39186 0.7 0.208381
Target:  5'- uGCGCG-CGCUGCAccGGCaGCaCGGCc- -3'
miRNA:   3'- cCGCGCuGCGACGU--UCGaCG-GCCGca -5'
16999 3' -61 NC_004333.2 + 21443 0.7 0.208381
Target:  5'- gGGCGcCGACGCaauggGuCAAGUuccugGCCGGCGc -3'
miRNA:   3'- -CCGC-GCUGCGa----C-GUUCGa----CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 13121 0.7 0.213853
Target:  5'- cGGCaucGCGA-GCUGCGucauGCugaUGCCGGCGa -3'
miRNA:   3'- -CCG---CGCUgCGACGUu---CG---ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 31244 0.7 0.221721
Target:  5'- cGCGCGGCGCagcgccgucucggugUucgucaguGCAAGCaccaUGCCGGCGa -3'
miRNA:   3'- cCGCGCUGCG---------------A--------CGUUCG----ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 37698 0.7 0.221721
Target:  5'- cGGCGCGugGCggcucaauggccugcUcgaugucgGCAAGCUGCCGcGCc- -3'
miRNA:   3'- -CCGCGCugCG---------------A--------CGUUCGACGGC-CGca -5'
16999 3' -61 NC_004333.2 + 18503 0.69 0.225168
Target:  5'- cGGCacGCcgacgGACGCUGCAGcggccuucGCaGCCGGCGg -3'
miRNA:   3'- -CCG--CG-----CUGCGACGUU--------CGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 47954 0.69 0.225168
Target:  5'- gGGCGaccCGACGCacauuuauggcGCAAGCcaaGCCGGCGg -3'
miRNA:   3'- -CCGC---GCUGCGa----------CGUUCGa--CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 19252 0.69 0.225168
Target:  5'- cGGCGCGcCGCUacgcaccgacgGCAAGUaugcGCCGGCc- -3'
miRNA:   3'- -CCGCGCuGCGA-----------CGUUCGa---CGGCCGca -5'
16999 3' -61 NC_004333.2 + 11009 0.69 0.225168
Target:  5'- cGGCGUGucgccGCGCUGCGGGaUGCCGcacgugaucGCGUc -3'
miRNA:   3'- -CCGCGC-----UGCGACGUUCgACGGC---------CGCA- -5'
16999 3' -61 NC_004333.2 + 17883 0.69 0.225168
Target:  5'- aGGCGCGACgGCgGCcAGCUcGCCGuCGa -3'
miRNA:   3'- -CCGCGCUG-CGaCGuUCGA-CGGCcGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.