miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 45503 1.08 0.000242
Target:  5'- cGGCGCGACGCUGCAAGCUGCCGGCGUu -3'
miRNA:   3'- -CCGCGCUGCGACGUUCGACGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 9605 0.82 0.024271
Target:  5'- cGGCGCGGCaucggccgGUUGCGcaccGGCUGCCGGCGg -3'
miRNA:   3'- -CCGCGCUG--------CGACGU----UCGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 46481 0.78 0.04977
Target:  5'- uGCGCGACuauuacaaagGCUGCAAGCgcGCCGGUGg -3'
miRNA:   3'- cCGCGCUG----------CGACGUUCGa-CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 14727 0.78 0.051209
Target:  5'- cGGCGCGcCGCUGCcaauGCUGCCGGa-- -3'
miRNA:   3'- -CCGCGCuGCGACGuu--CGACGGCCgca -5'
16999 3' -61 NC_004333.2 + 8649 0.73 0.125445
Target:  5'- cGGCGCGGCGCccgGCuuGCUcgugacggugccGUCGGCGUu -3'
miRNA:   3'- -CCGCGCUGCGa--CGuuCGA------------CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 25728 0.73 0.13248
Target:  5'- cGC-CGGCcaGCUGCAGGCcgGUCGGCGUg -3'
miRNA:   3'- cCGcGCUG--CGACGUUCGa-CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 29661 0.73 0.13248
Target:  5'- cGGCuGCGAaggcCGCUGCAgcguccgucGGCgUGCCGGCa- -3'
miRNA:   3'- -CCG-CGCU----GCGACGU---------UCG-ACGGCCGca -5'
16999 3' -61 NC_004333.2 + 20313 0.72 0.136132
Target:  5'- cGCGaCGugGUUGcCAGGCuUGCCGGcCGUg -3'
miRNA:   3'- cCGC-GCugCGAC-GUUCG-ACGGCC-GCA- -5'
16999 3' -61 NC_004333.2 + 5068 0.72 0.136132
Target:  5'- cGGCGCGGCGCUGaacAGCgucaGCaGGUGUg -3'
miRNA:   3'- -CCGCGCUGCGACgu-UCGa---CGgCCGCA- -5'
16999 3' -61 NC_004333.2 + 42108 0.72 0.143715
Target:  5'- aGGCGUGuCGCgaggUGCGccAGUUGCCGGUGc -3'
miRNA:   3'- -CCGCGCuGCG----ACGU--UCGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 42556 0.72 0.143715
Target:  5'- uGCGCGuuGcCUGCAAGCUGCCGcaCGg -3'
miRNA:   3'- cCGCGCugC-GACGUUCGACGGCc-GCa -5'
16999 3' -61 NC_004333.2 + 38545 0.72 0.143715
Target:  5'- gGGCGCaGGCGCgccGCcGGCaGCCGGUGc -3'
miRNA:   3'- -CCGCG-CUGCGa--CGuUCGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 6642 0.72 0.143715
Target:  5'- -uCGCGACGCUGaCGAugUGCCGGUGUu -3'
miRNA:   3'- ccGCGCUGCGAC-GUUcgACGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 8924 0.72 0.147649
Target:  5'- uGCGCGACGCgGCuucguucGC-GCCGGCGc -3'
miRNA:   3'- cCGCGCUGCGaCGuu-----CGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 27669 0.72 0.147649
Target:  5'- cGGCGCGGCgGCggccgGCAgcGGUUGCgCGGCa- -3'
miRNA:   3'- -CCGCGCUG-CGa----CGU--UCGACG-GCCGca -5'
16999 3' -61 NC_004333.2 + 40306 0.72 0.14925
Target:  5'- uGGaCGCGAUGggGCGAGCgcgagcuggaaaugGCCGGCGc -3'
miRNA:   3'- -CC-GCGCUGCgaCGUUCGa-------------CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 28283 0.72 0.155814
Target:  5'- cGGCGCGGauggcccagaGCUGCuGAGC-GCgGGCGUa -3'
miRNA:   3'- -CCGCGCUg---------CGACG-UUCGaCGgCCGCA- -5'
16999 3' -61 NC_004333.2 + 25405 0.72 0.155814
Target:  5'- cGGCGagcGCGcCUGC-AGCgUGCCGGCGg -3'
miRNA:   3'- -CCGCgc-UGC-GACGuUCG-ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 31115 0.71 0.160048
Target:  5'- cGGCGCGAguUGCUGCucGCgcgcgaGCCcGGCGa -3'
miRNA:   3'- -CCGCGCU--GCGACGuuCGa-----CGG-CCGCa -5'
16999 3' -61 NC_004333.2 + 13884 0.71 0.168828
Target:  5'- cGCGCGAagucgGCcgGCAcgGGCUGCgCGGCGg -3'
miRNA:   3'- cCGCGCUg----CGa-CGU--UCGACG-GCCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.