miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 21164 0.69 0.225168
Target:  5'- uGGUGCGcuucGCGCUGCc-GCagGCCGGCc- -3'
miRNA:   3'- -CCGCGC----UGCGACGuuCGa-CGGCCGca -5'
16999 3' -61 NC_004333.2 + 31244 0.7 0.221721
Target:  5'- cGCGCGGCGCagcgccgucucggugUucgucaguGCAAGCaccaUGCCGGCGa -3'
miRNA:   3'- cCGCGCUGCG---------------A--------CGUUCG----ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 13884 0.71 0.168828
Target:  5'- cGCGCGAagucgGCcgGCAcgGGCUGCgCGGCGg -3'
miRNA:   3'- cCGCGCUg----CGa-CGU--UCGACG-GCCGCa -5'
16999 3' -61 NC_004333.2 + 25728 0.73 0.13248
Target:  5'- cGC-CGGCcaGCUGCAGGCcgGUCGGCGUg -3'
miRNA:   3'- cCGcGCUG--CGACGUUCGa-CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 41437 0.68 0.268807
Target:  5'- aGGCGCugcucGACGCggGCGAGUcgGCCGuCGUg -3'
miRNA:   3'- -CCGCG-----CUGCGa-CGUUCGa-CGGCcGCA- -5'
16999 3' -61 NC_004333.2 + 25940 0.69 0.249319
Target:  5'- cGCGCGGCGCga-----UGCCGGCGg -3'
miRNA:   3'- cCGCGCUGCGacguucgACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 13121 0.7 0.213853
Target:  5'- cGGCaucGCGA-GCUGCGucauGCugaUGCCGGCGa -3'
miRNA:   3'- -CCG---CGCUgCGACGUu---CG---ACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 8649 0.73 0.125445
Target:  5'- cGGCGCGGCGCccgGCuuGCUcgugacggugccGUCGGCGUu -3'
miRNA:   3'- -CCGCGCUGCGa--CGuuCGA------------CGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 45435 0.69 0.236986
Target:  5'- cGGCGaCGGCGCauucGCGAGCaUGgCGGCc- -3'
miRNA:   3'- -CCGC-GCUGCGa---CGUUCG-ACgGCCGca -5'
16999 3' -61 NC_004333.2 + 46481 0.78 0.04977
Target:  5'- uGCGCGACuauuacaaagGCUGCAAGCgcGCCGGUGg -3'
miRNA:   3'- cCGCGCUG----------CGACGUUCGa-CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 37698 0.7 0.221721
Target:  5'- cGGCGCGugGCggcucaauggccugcUcgaugucgGCAAGCUGCCGcGCc- -3'
miRNA:   3'- -CCGCGCugCG---------------A--------CGUUCGACGGC-CGca -5'
16999 3' -61 NC_004333.2 + 30646 0.69 0.225168
Target:  5'- aGGCGCGgcguGCGCUGCucgagcaccuucaugAAGCcguucgcgccgccGCCGGCGg -3'
miRNA:   3'- -CCGCGC----UGCGACG---------------UUCGa------------CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 28889 0.7 0.187689
Target:  5'- cGCGCGAuCGC-GCucGGCgcagGCCGGCGc -3'
miRNA:   3'- cCGCGCU-GCGaCGu-UCGa---CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 1144 0.71 0.178037
Target:  5'- cGCGCGACGUUGCA--CUGCauauccgaucgCGGCGg -3'
miRNA:   3'- cCGCGCUGCGACGUucGACG-----------GCCGCa -5'
16999 3' -61 NC_004333.2 + 8924 0.72 0.147649
Target:  5'- uGCGCGACGCgGCuucguucGC-GCCGGCGc -3'
miRNA:   3'- cCGCGCUGCGaCGuu-----CGaCGGCCGCa -5'
16999 3' -61 NC_004333.2 + 20313 0.72 0.136132
Target:  5'- cGCGaCGugGUUGcCAGGCuUGCCGGcCGUg -3'
miRNA:   3'- cCGC-GCugCGAC-GUUCG-ACGGCC-GCA- -5'
16999 3' -61 NC_004333.2 + 17032 0.68 0.28247
Target:  5'- cGUGC-ACGCUGCAGGCcaaUGGCGUc -3'
miRNA:   3'- cCGCGcUGCGACGUUCGacgGCCGCA- -5'
16999 3' -61 NC_004333.2 + 4169 0.68 0.275571
Target:  5'- aGCGCGcCGC-GCucguGCUGCagCGGCGUg -3'
miRNA:   3'- cCGCGCuGCGaCGuu--CGACG--GCCGCA- -5'
16999 3' -61 NC_004333.2 + 47477 0.68 0.268807
Target:  5'- cGGCgGCGacugccGCGCUGaacgAGGCgccgGCCGGCGc -3'
miRNA:   3'- -CCG-CGC------UGCGACg---UUCGa---CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 46698 0.69 0.255682
Target:  5'- uGGCgGCG-CGCUaCAaaaAGCUGCCGGuCGa -3'
miRNA:   3'- -CCG-CGCuGCGAcGU---UCGACGGCC-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.