miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 3' -61 NC_004333.2 + 47954 0.69 0.225168
Target:  5'- gGGCGaccCGACGCacauuuauggcGCAAGCcaaGCCGGCGg -3'
miRNA:   3'- -CCGC---GCUGCGa----------CGUUCGa--CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 47923 0.71 0.182807
Target:  5'- uGGCuGCGAuucuggUGCUauucgGCAAGCUGCuCGGCGc -3'
miRNA:   3'- -CCG-CGCU------GCGA-----CGUUCGACG-GCCGCa -5'
16999 3' -61 NC_004333.2 + 47477 0.68 0.268807
Target:  5'- cGGCgGCGacugccGCGCUGaacgAGGCgccgGCCGGCGc -3'
miRNA:   3'- -CCG-CGC------UGCGACg---UUCGa---CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 46698 0.69 0.255682
Target:  5'- uGGCgGCG-CGCUaCAaaaAGCUGCCGGuCGa -3'
miRNA:   3'- -CCG-CGCuGCGAcGU---UCGACGGCC-GCa -5'
16999 3' -61 NC_004333.2 + 46481 0.78 0.04977
Target:  5'- uGCGCGACuauuacaaagGCUGCAAGCgcGCCGGUGg -3'
miRNA:   3'- cCGCGCUG----------CGACGUUCGa-CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 46164 0.68 0.262178
Target:  5'- cGGcCGUGACGUcggGCAucauccGC-GCCGGCGUa -3'
miRNA:   3'- -CC-GCGCUGCGa--CGUu-----CGaCGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 45503 1.08 0.000242
Target:  5'- cGGCGCGACGCUGCAAGCUGCCGGCGUu -3'
miRNA:   3'- -CCGCGCUGCGACGUUCGACGGCCGCA- -5'
16999 3' -61 NC_004333.2 + 45435 0.69 0.236986
Target:  5'- cGGCGaCGGCGCauucGCGAGCaUGgCGGCc- -3'
miRNA:   3'- -CCGC-GCUGCGa---CGUUCG-ACgGCCGca -5'
16999 3' -61 NC_004333.2 + 45221 0.67 0.326742
Target:  5'- gGGCGUcACGCUcGCGcAGCUGCagGGCu- -3'
miRNA:   3'- -CCGCGcUGCGA-CGU-UCGACGg-CCGca -5'
16999 3' -61 NC_004333.2 + 45181 0.66 0.350735
Target:  5'- cGGCG-GACGCgccgGCGAGCgucuaCGGCa- -3'
miRNA:   3'- -CCGCgCUGCGa---CGUUCGacg--GCCGca -5'
16999 3' -61 NC_004333.2 + 44434 0.67 0.326742
Target:  5'- uGGUGCG-UGCgagGCGcucGGcCUGCCGGUGc -3'
miRNA:   3'- -CCGCGCuGCGa--CGU---UC-GACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 44394 0.67 0.334602
Target:  5'- cGGCGCGuGCGCgGUAcaacGGcCUGCCGGg-- -3'
miRNA:   3'- -CCGCGC-UGCGaCGU----UC-GACGGCCgca -5'
16999 3' -61 NC_004333.2 + 42556 0.72 0.143715
Target:  5'- uGCGCGuuGcCUGCAAGCUGCCGcaCGg -3'
miRNA:   3'- cCGCGCugC-GACGUUCGACGGCc-GCa -5'
16999 3' -61 NC_004333.2 + 42323 0.67 0.309934
Target:  5'- gGGCGUGGCG-UGCAuaaauaccgGCCGGCGc -3'
miRNA:   3'- -CCGCGCUGCgACGUucga-----CGGCCGCa -5'
16999 3' -61 NC_004333.2 + 42108 0.72 0.143715
Target:  5'- aGGCGUGuCGCgaggUGCGccAGUUGCCGGUGc -3'
miRNA:   3'- -CCGCGCuGCG----ACGU--UCGACGGCCGCa -5'
16999 3' -61 NC_004333.2 + 41649 0.71 0.182807
Target:  5'- gGGCGCGG-GCUGC-GGCcguacGCCGGCa- -3'
miRNA:   3'- -CCGCGCUgCGACGuUCGa----CGGCCGca -5'
16999 3' -61 NC_004333.2 + 41589 0.66 0.350735
Target:  5'- cGGCGCGcCGUggcggcgaUGCGGGCUuUCGcGCGUa -3'
miRNA:   3'- -CCGCGCuGCG--------ACGUUCGAcGGC-CGCA- -5'
16999 3' -61 NC_004333.2 + 41529 0.66 0.367412
Target:  5'- aGCGCGcCGa-GCGcGCUGCCGaGCGc -3'
miRNA:   3'- cCGCGCuGCgaCGUuCGACGGC-CGCa -5'
16999 3' -61 NC_004333.2 + 41437 0.68 0.268807
Target:  5'- aGGCGCugcucGACGCggGCGAGUcgGCCGuCGUg -3'
miRNA:   3'- -CCGCG-----CUGCGa-CGUUCGa-CGGCcGCA- -5'
16999 3' -61 NC_004333.2 + 40847 0.67 0.326742
Target:  5'- aGGCGCG-CGCcuucuGGUcGCCGGCGa -3'
miRNA:   3'- -CCGCGCuGCGacgu-UCGaCGGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.