miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 9939 0.67 0.548516
Target:  5'- --uCGCCGcGCAGGUGUuugccgucGAACCGCa -3'
miRNA:   3'- uauGCGGC-CGUUCGCGcua-----CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 30637 0.67 0.548516
Target:  5'- -aGCG-CGGCAAgGCGCGGcgUGcGCUGCu -3'
miRNA:   3'- uaUGCgGCCGUU-CGCGCU--ACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 39247 0.67 0.548516
Target:  5'- -aGCGCCGGC--GCGaaCGA--AGCCGCg -3'
miRNA:   3'- uaUGCGGCCGuuCGC--GCUacUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 31098 0.68 0.537666
Target:  5'- -gGCGCCuGGCccgucagcGGCGCGAguuGCUGCu -3'
miRNA:   3'- uaUGCGG-CCGu-------UCGCGCUacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 17621 0.68 0.537666
Target:  5'- -gACGCCGGCc-GCGCccgGuGCCGUg -3'
miRNA:   3'- uaUGCGGCCGuuCGCGcuaCuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 17026 0.68 0.537666
Target:  5'- -gAUGCCaaGGCGGGCGgCGAUGcauUCGCc -3'
miRNA:   3'- uaUGCGG--CCGUUCGC-GCUACuu-GGCG- -5'
16999 5' -55.7 NC_004333.2 + 27437 0.68 0.536585
Target:  5'- -cGCGUCGGCGAuguccggcagcgcGCGCGccGucaucACCGCa -3'
miRNA:   3'- uaUGCGGCCGUU-------------CGCGCuaCu----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 41957 0.68 0.534425
Target:  5'- -gACGCUGaGCAcaugacgugucgccAGUGCGGgcGACCGCg -3'
miRNA:   3'- uaUGCGGC-CGU--------------UCGCGCUacUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 911 0.68 0.526891
Target:  5'- uGUugGUCGGCAuuGCGCccucguagcGUGcGCCGCg -3'
miRNA:   3'- -UAugCGGCCGUu-CGCGc--------UACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 29946 0.68 0.526891
Target:  5'- cGUGcCGUCGGCGucguagauuuccGGCGCGuauUGcgauGCCGCg -3'
miRNA:   3'- -UAU-GCGGCCGU------------UCGCGCu--ACu---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19505 0.68 0.526891
Target:  5'- -cGCGCUGGC-GGCGCucGUG-GCCGUa -3'
miRNA:   3'- uaUGCGGCCGuUCGCGc-UACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 47381 0.68 0.525818
Target:  5'- cUGCGCCGGCGAcCGgcacgcucaagguCGAaGGGCUGCa -3'
miRNA:   3'- uAUGCGGCCGUUcGC-------------GCUaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 66 0.68 0.524746
Target:  5'- -cAUGCCGGCGcgguGCGCGcgcccgguuGCCGCc -3'
miRNA:   3'- uaUGCGGCCGUu---CGCGCuacu-----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 33413 0.68 0.516198
Target:  5'- -gGCGCa-GCGAcuGCGCGccGAACCGUa -3'
miRNA:   3'- uaUGCGgcCGUU--CGCGCuaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 5214 0.68 0.505593
Target:  5'- --cCGCCGGCGAGgGUGcgGGuugcAgCGCa -3'
miRNA:   3'- uauGCGGCCGUUCgCGCuaCU----UgGCG- -5'
16999 5' -55.7 NC_004333.2 + 39260 0.68 0.501378
Target:  5'- -aGCgGCCGGCAGGCGCacgcgcgcgcGAUCGCa -3'
miRNA:   3'- uaUG-CGGCCGUUCGCGcuac------UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 31009 0.68 0.484674
Target:  5'- --uCGCgCGGUAGGUGCGcUGcAGCUGCu -3'
miRNA:   3'- uauGCG-GCCGUUCGCGCuAC-UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 13895 0.68 0.484674
Target:  5'- ---gGCCGGCAcgggcuGCGCGgcGGcuGCCGUg -3'
miRNA:   3'- uaugCGGCCGUu-----CGCGCuaCU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 684 0.68 0.480539
Target:  5'- -cGCGCCGGCcggcgccucguucAGCGCGGcagucGCCGCc -3'
miRNA:   3'- uaUGCGGCCGu------------UCGCGCUacu--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9458 0.69 0.47437
Target:  5'- cUGCGCac-CAGGCGCGGgu-GCCGCa -3'
miRNA:   3'- uAUGCGgccGUUCGCGCUacuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.