miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 16768 0.67 0.592512
Target:  5'- cUGCGCCgacacGGCAAG-GCGu---ACCGCg -3'
miRNA:   3'- uAUGCGG-----CCGUUCgCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 32453 0.67 0.592512
Target:  5'- -gGCGCCcuucaGCGc-CGCGAcGAGCCGCa -3'
miRNA:   3'- uaUGCGGc----CGUucGCGCUaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 17766 0.67 0.592512
Target:  5'- ---aGCCGGCGccGCGCGGU-AAUUGCa -3'
miRNA:   3'- uaugCGGCCGUu-CGCGCUAcUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 3149 0.67 0.592512
Target:  5'- -cGCGCCGccaGCGccacGCGCGGUcGAGCgGCc -3'
miRNA:   3'- uaUGCGGC---CGUu---CGCGCUA-CUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 32706 0.67 0.581439
Target:  5'- uUGCGCuCGGCAcgccaAGCGCGccGAucgaccCCGUu -3'
miRNA:   3'- uAUGCG-GCCGU-----UCGCGCuaCUu-----GGCG- -5'
16999 5' -55.7 NC_004333.2 + 2442 0.67 0.581439
Target:  5'- gGUACgGCgCGGCGAacaccuGCGCGccGAacgaaGCCGCg -3'
miRNA:   3'- -UAUG-CG-GCCGUU------CGCGCuaCU-----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 20980 0.67 0.574817
Target:  5'- -gGCGCgGGCGagugggugcguuucgAGCGCG-UGGcaGCCGUc -3'
miRNA:   3'- uaUGCGgCCGU---------------UCGCGCuACU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 32765 0.67 0.570411
Target:  5'- --cCGCCGGCcauAAGCGCGGcaccuugcauUGcGACCGg -3'
miRNA:   3'- uauGCGGCCG---UUCGCGCU----------AC-UUGGCg -5'
16999 5' -55.7 NC_004333.2 + 2398 0.67 0.570411
Target:  5'- -gGCGCCGGCGGuCGCc-UGGucGCCGUa -3'
miRNA:   3'- uaUGCGGCCGUUcGCGcuACU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 38227 0.67 0.570411
Target:  5'- ---aGUCGaGCAAGCGCGccGcGCCGUu -3'
miRNA:   3'- uaugCGGC-CGUUCGCGCuaCuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 22971 0.67 0.570411
Target:  5'- --cCGCCGGC-AGCGuCGcgGuACCGg -3'
miRNA:   3'- uauGCGGCCGuUCGC-GCuaCuUGGCg -5'
16999 5' -55.7 NC_004333.2 + 44952 0.67 0.567112
Target:  5'- cUGC-CCGGCGucaucggggcgggcGGCGCGccGGGCCGg -3'
miRNA:   3'- uAUGcGGCCGU--------------UCGCGCuaCUUGGCg -5'
16999 5' -55.7 NC_004333.2 + 35796 0.67 0.559434
Target:  5'- -cGCGCCgGGCgGGGCGCGGgcGGgCGCu -3'
miRNA:   3'- uaUGCGG-CCG-UUCGCGCUacUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 37620 0.67 0.559434
Target:  5'- gAUGCGCCcGauaAAcGCGCGAUG-GCCGUc -3'
miRNA:   3'- -UAUGCGGcCg--UU-CGCGCUACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 5063 0.67 0.559434
Target:  5'- -gACGUCGGCGcGGCGC--UGAACaGCg -3'
miRNA:   3'- uaUGCGGCCGU-UCGCGcuACUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 5196 0.67 0.559434
Target:  5'- --uCGCCuGCAGGCGCGgcGucggcACCGUc -3'
miRNA:   3'- uauGCGGcCGUUCGCGCuaCu----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 8492 0.67 0.559434
Target:  5'- -gGCGCaGGCAGGC-CGAccagGAAgCGCg -3'
miRNA:   3'- uaUGCGgCCGUUCGcGCUa---CUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 9397 0.67 0.559434
Target:  5'- -cAUGCCggacauuucGGCAAGCucgGCGAUGccgcucguGGCCGCu -3'
miRNA:   3'- uaUGCGG---------CCGUUCG---CGCUAC--------UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 31148 0.67 0.556152
Target:  5'- cAUugGCCuGCAgcgugcacgagucgAGCGCGgcGAcggcguauGCCGCg -3'
miRNA:   3'- -UAugCGGcCGU--------------UCGCGCuaCU--------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 37404 0.67 0.556152
Target:  5'- cUACGUCGGCGcucgcgguuugcgcGGCGUGcacGUGuACUGCg -3'
miRNA:   3'- uAUGCGGCCGU--------------UCGCGC---UACuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.