miRNA display CGI


Results 21 - 40 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 44426 0.66 0.63705
Target:  5'- --uCGCUGGCuGGUGCGugcGAGgCGCu -3'
miRNA:   3'- uauGCGGCCGuUCGCGCua-CUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 5952 0.66 0.635935
Target:  5'- --uUGUCGGCcgucGUGCGGUcgaagucGAGCCGCa -3'
miRNA:   3'- uauGCGGCCGuu--CGCGCUA-------CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 24277 0.66 0.625897
Target:  5'- -cGCGCCguucGGCuuccGCaCGAUGAACgGCg -3'
miRNA:   3'- uaUGCGG----CCGuu--CGcGCUACUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 38558 0.66 0.625897
Target:  5'- --cCGCCGGCAgccGGUGCGc--AACCGg -3'
miRNA:   3'- uauGCGGCCGU---UCGCGCuacUUGGCg -5'
16999 5' -55.7 NC_004333.2 + 41665 0.66 0.619207
Target:  5'- cGUACGCCGGCAAggagaauauccucguGCuCGAcgcGGGCgGCa -3'
miRNA:   3'- -UAUGCGGCCGUU---------------CGcGCUa--CUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 11306 0.66 0.61475
Target:  5'- cUGCGCCGucgccuuguuGCAcuggucgcGCGCGAUGAagGCgGCg -3'
miRNA:   3'- uAUGCGGC----------CGUu-------CGCGCUACU--UGgCG- -5'
16999 5' -55.7 NC_004333.2 + 8297 0.66 0.61475
Target:  5'- uGUAgGuaGGC-GGCGCGcgGGGCuCGCg -3'
miRNA:   3'- -UAUgCggCCGuUCGCGCuaCUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 46907 0.66 0.61475
Target:  5'- -cGCGCCaGGC-GGCGCGccaagGAGCaCGUc -3'
miRNA:   3'- uaUGCGG-CCGuUCGCGCua---CUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 43159 0.66 0.61475
Target:  5'- --cCGCCuGuCAAGCGCGAcgGAaggcACCGUg -3'
miRNA:   3'- uauGCGGcC-GUUCGCGCUa-CU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 17802 0.66 0.61475
Target:  5'- -gACGuUCGGCAu-CGCGGUcgacgauccGAACCGCg -3'
miRNA:   3'- uaUGC-GGCCGUucGCGCUA---------CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19912 0.66 0.61475
Target:  5'- -cGCGCCGuccGCAucaucgacgacgAGCGCGccGGGCgGCg -3'
miRNA:   3'- uaUGCGGC---CGU------------UCGCGCuaCUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 24850 0.66 0.61475
Target:  5'- --cCGUCGGCGGcCGCac-GAACCGCa -3'
miRNA:   3'- uauGCGGCCGUUcGCGcuaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 26466 0.66 0.613636
Target:  5'- -aGCuGCUGGCGcacgugcgcauagAGCGCGucGAGCUGCu -3'
miRNA:   3'- uaUG-CGGCCGU-------------UCGCGCuaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19156 0.66 0.611408
Target:  5'- -cGCGCUGGUuaucgugcuagccgcGCGCGAUGcGCaCGCc -3'
miRNA:   3'- uaUGCGGCCGuu-------------CGCGCUACuUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 12082 0.66 0.603618
Target:  5'- cGUACG-UGGCuGGCGCGcagcGCCGCg -3'
miRNA:   3'- -UAUGCgGCCGuUCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 28745 0.66 0.603618
Target:  5'- ---gGCCaGCAAcuGCGCGAgc-GCCGCg -3'
miRNA:   3'- uaugCGGcCGUU--CGCGCUacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 18175 0.66 0.603618
Target:  5'- --uUGCCGGCGuGcCG-GGUGAugCGCu -3'
miRNA:   3'- uauGCGGCCGUuC-GCgCUACUugGCG- -5'
16999 5' -55.7 NC_004333.2 + 48095 0.66 0.603618
Target:  5'- -gGCGCaggCGGCAaccgGGCGCGcgc-ACCGCg -3'
miRNA:   3'- uaUGCG---GCCGU----UCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 20943 0.66 0.603618
Target:  5'- -gGCGCaGGCAGacGCucgaucacgacgGCGAUGuACCGCg -3'
miRNA:   3'- uaUGCGgCCGUU--CG------------CGCUACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9273 0.66 0.603618
Target:  5'- uGUugGCCGuGCcgaucAGCGCGAagcggcgcgGGugCGCg -3'
miRNA:   3'- -UAugCGGC-CGu----UCGCGCUa--------CUugGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.