miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 5214 0.68 0.505593
Target:  5'- --cCGCCGGCGAGgGUGcgGGuugcAgCGCa -3'
miRNA:   3'- uauGCGGCCGUUCgCGCuaCU----UgGCG- -5'
16999 5' -55.7 NC_004333.2 + 5544 0.69 0.443152
Target:  5'- ---gGCCGGCGacggcuuGGCGCGAgugcaGACCGUu -3'
miRNA:   3'- uaugCGGCCGU-------UCGCGCUac---UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 5952 0.66 0.635935
Target:  5'- --uUGUCGGCcgucGUGCGGUcgaagucGAGCCGCa -3'
miRNA:   3'- uauGCGGCCGuu--CGCGCUA-------CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 6306 0.66 0.659331
Target:  5'- -cGCGCUGGUgaaAGGCuGCGcagccGUGAggacgACCGCa -3'
miRNA:   3'- uaUGCGGCCG---UUCG-CGC-----UACU-----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 6569 0.75 0.183906
Target:  5'- ---aGCaCGaGCGAGCGCG-UGGGCCGCa -3'
miRNA:   3'- uaugCG-GC-CGUUCGCGCuACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 6667 0.73 0.274028
Target:  5'- -cGCGCuCGaGCAGGCGCGcAUccGCCGCu -3'
miRNA:   3'- uaUGCG-GC-CGUUCGCGC-UAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 7987 0.71 0.343419
Target:  5'- --uCGUCGGCucuGCgGUGAUGAacGCCGCg -3'
miRNA:   3'- uauGCGGCCGuu-CG-CGCUACU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 8234 0.7 0.396278
Target:  5'- -gACGCCGGCccGCGCGAgguucUGAAUaCGUu -3'
miRNA:   3'- uaUGCGGCCGuuCGCGCU-----ACUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 8297 0.66 0.61475
Target:  5'- uGUAgGuaGGC-GGCGCGcgGGGCuCGCg -3'
miRNA:   3'- -UAUgCggCCGuUCGCGCuaCUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 8492 0.67 0.559434
Target:  5'- -gGCGCaGGCAGGC-CGAccagGAAgCGCg -3'
miRNA:   3'- uaUGCGgCCGUUCGcGCUa---CUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 8544 0.66 0.648198
Target:  5'- -cGCGaCCGGCAuGCcCGGcUGGAUCGUg -3'
miRNA:   3'- uaUGC-GGCCGUuCGcGCU-ACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 8788 0.69 0.444141
Target:  5'- --uCGCCGGCAaugccuugcgccGGCGUGAUGuaGACCu- -3'
miRNA:   3'- uauGCGGCCGU------------UCGCGCUAC--UUGGcg -5'
16999 5' -55.7 NC_004333.2 + 8865 0.7 0.415026
Target:  5'- gGUAuCG-CGGCugcGGCGCGGUuAGCCGCg -3'
miRNA:   3'- -UAU-GCgGCCGu--UCGCGCUAcUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 8943 0.73 0.257527
Target:  5'- -cGCGCCGGCGcuguccaucgcguGCGCGGgcuggaucgUGGGCCGUg -3'
miRNA:   3'- uaUGCGGCCGUu------------CGCGCU---------ACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9103 0.7 0.378085
Target:  5'- uUGCGCUGuCGAGCGCaAUGucGCCGCc -3'
miRNA:   3'- uAUGCGGCcGUUCGCGcUACu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9273 0.66 0.603618
Target:  5'- uGUugGCCGuGCcgaucAGCGCGAagcggcgcgGGugCGCg -3'
miRNA:   3'- -UAugCGGC-CGu----UCGCGCUa--------CUugGCG- -5'
16999 5' -55.7 NC_004333.2 + 9397 0.67 0.559434
Target:  5'- -cAUGCCggacauuucGGCAAGCucgGCGAUGccgcucguGGCCGCu -3'
miRNA:   3'- uaUGCGG---------CCGUUCG---CGCUAC--------UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9458 0.69 0.47437
Target:  5'- cUGCGCac-CAGGCGCGGgu-GCCGCa -3'
miRNA:   3'- uAUGCGgccGUUCGCGCUacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9476 0.73 0.245048
Target:  5'- -aGCGCCGGCGgcugcgggaauuucAGCGCGgcGGccaGCUGCu -3'
miRNA:   3'- uaUGCGGCCGU--------------UCGCGCuaCU---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9734 0.71 0.360461
Target:  5'- -cGCGUCGGCGacaugAGCGCcg-GAugCGCg -3'
miRNA:   3'- uaUGCGGCCGU-----UCGCGcuaCUugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.