miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 41957 0.68 0.534425
Target:  5'- -gACGCUGaGCAcaugacgugucgccAGUGCGGgcGACCGCg -3'
miRNA:   3'- uaUGCGGC-CGU--------------UCGCGCUacUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 41745 0.66 0.658219
Target:  5'- -gGCGCgGGCGAcucGCGCGccgggcuAUGGGuCUGCa -3'
miRNA:   3'- uaUGCGgCCGUU---CGCGC-------UACUU-GGCG- -5'
16999 5' -55.7 NC_004333.2 + 41665 0.66 0.619207
Target:  5'- cGUACGCCGGCAAggagaauauccucguGCuCGAcgcGGGCgGCa -3'
miRNA:   3'- -UAUGCGGCCGUU---------------CGcGCUa--CUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 41517 0.72 0.318959
Target:  5'- -cGCGCCuGCucGAGCGCGccGAGCgCGCu -3'
miRNA:   3'- uaUGCGGcCG--UUCGCGCuaCUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 41318 0.69 0.454099
Target:  5'- -cGC-CCGGC--GCGCGAUGGACgugaCGCg -3'
miRNA:   3'- uaUGcGGCCGuuCGCGCUACUUG----GCG- -5'
16999 5' -55.7 NC_004333.2 + 40896 0.75 0.199546
Target:  5'- cUGCGCCGGCuuGCGC-AUGAAagUCGCa -3'
miRNA:   3'- uAUGCGGCCGuuCGCGcUACUU--GGCG- -5'
16999 5' -55.7 NC_004333.2 + 40308 0.72 0.286221
Target:  5'- -gACGCgauggGGCGAGCGCGAgcugGAaauggccggcgcagGCCGCg -3'
miRNA:   3'- uaUGCGg----CCGUUCGCGCUa---CU--------------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 39951 0.66 0.648198
Target:  5'- -cGCGCgGGCcGGCGUcAUccuGCCGCg -3'
miRNA:   3'- uaUGCGgCCGuUCGCGcUAcu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 39260 0.68 0.501378
Target:  5'- -aGCgGCCGGCAGGCGCacgcgcgcgcGAUCGCa -3'
miRNA:   3'- uaUG-CGGCCGUUCGCGcuac------UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 39247 0.67 0.548516
Target:  5'- -aGCGCCGGC--GCGaaCGA--AGCCGCg -3'
miRNA:   3'- uaUGCGGCCGuuCGC--GCUacUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 39166 0.73 0.274028
Target:  5'- -cGCGCCgccuGGCAAGcCGCGAac-GCCGCg -3'
miRNA:   3'- uaUGCGG----CCGUUC-GCGCUacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 38590 0.72 0.311101
Target:  5'- -cGCGCCGGCuGGCGCugaaGGUG-GCgGCa -3'
miRNA:   3'- uaUGCGGCCGuUCGCG----CUACuUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 38558 0.66 0.625897
Target:  5'- --cCGCCGGCAgccGGUGCGc--AACCGg -3'
miRNA:   3'- uauGCGGCCGU---UCGCGCuacUUGGCg -5'
16999 5' -55.7 NC_004333.2 + 38389 0.7 0.393513
Target:  5'- gGUGCGCCGGCGugacgccGGCcacggucaagacgGCGAUcGAgacgcuuGCCGCg -3'
miRNA:   3'- -UAUGCGGCCGU-------UCG-------------CGCUA-CU-------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 38227 0.67 0.570411
Target:  5'- ---aGUCGaGCAAGCGCGccGcGCCGUu -3'
miRNA:   3'- uaugCGGC-CGUUCGCGCuaCuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 37620 0.67 0.559434
Target:  5'- gAUGCGCCcGauaAAcGCGCGAUG-GCCGUc -3'
miRNA:   3'- -UAUGCGGcCg--UU-CGCGCUACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 37510 0.72 0.286221
Target:  5'- cGUGCaCCGGCcGGCGCGAccgUGAcgucaccuuucuucGCCGCc -3'
miRNA:   3'- -UAUGcGGCCGuUCGCGCU---ACU--------------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 37425 0.72 0.303392
Target:  5'- uUGCGCCGGgccGCGCGGUacGAuacGCCGCc -3'
miRNA:   3'- uAUGCGGCCguuCGCGCUA--CU---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 37404 0.67 0.556152
Target:  5'- cUACGUCGGCGcucgcgguuugcgcGGCGUGcacGUGuACUGCg -3'
miRNA:   3'- uAUGCGGCCGU--------------UCGCGC---UACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 37305 0.69 0.443152
Target:  5'- -cGCGCCGGCGuucuucccGCGCGGcgucaagcgcgUGAcagcguacuugcgGCCGCu -3'
miRNA:   3'- uaUGCGGCCGUu-------CGCGCU-----------ACU-------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.