miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 48095 0.66 0.603618
Target:  5'- -gGCGCaggCGGCAaccgGGCGCGcgc-ACCGCg -3'
miRNA:   3'- uaUGCG---GCCGU----UCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 48043 0.71 0.360461
Target:  5'- -gGCGCUGGUGGuuugugcucauGCGCGAUGucguGCUGCu -3'
miRNA:   3'- uaUGCGGCCGUU-----------CGCGCUACu---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 47987 0.74 0.22219
Target:  5'- ---aGCCGGCGGGCGCacgggcaGUGGACuCGCg -3'
miRNA:   3'- uaugCGGCCGUUCGCGc------UACUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 47502 0.74 0.228183
Target:  5'- -gGCGCCGGCcGGCGCGAccaguacauUGAA-UGCa -3'
miRNA:   3'- uaUGCGGCCGuUCGCGCU---------ACUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 47472 0.69 0.464177
Target:  5'- -cGCGCCGGCG---GCGAcu-GCCGCg -3'
miRNA:   3'- uaUGCGGCCGUucgCGCUacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 47381 0.68 0.525818
Target:  5'- cUGCGCCGGCGAcCGgcacgcucaagguCGAaGGGCUGCa -3'
miRNA:   3'- uAUGCGGCCGUUcGC-------------GCUaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 46907 0.66 0.61475
Target:  5'- -cGCGCCaGGC-GGCGCGccaagGAGCaCGUc -3'
miRNA:   3'- uaUGCGG-CCGuUCGCGCua---CUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 46302 0.71 0.351867
Target:  5'- --cCGCCaauccgGGcCAGGCGCGucaGAACCGCa -3'
miRNA:   3'- uauGCGG------CC-GUUCGCGCua-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 46187 0.7 0.405583
Target:  5'- -cGCGCCGGCGuaaCGCuGAcGAACuCGCa -3'
miRNA:   3'- uaUGCGGCCGUuc-GCG-CUaCUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 46120 0.66 0.63705
Target:  5'- gGUGCGCgcuaCGGCAAGUuCGAgGAucacGCCGUg -3'
miRNA:   3'- -UAUGCG----GCCGUUCGcGCUaCU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 45713 0.66 0.659331
Target:  5'- -cACGCCuGCAucucgagcccGGCGCGAacgUGccGAUCGCg -3'
miRNA:   3'- uaUGCGGcCGU----------UCGCGCU---AC--UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 45537 1.1 0.00055
Target:  5'- gAUACGCCGGCAAGCGCGAUGAACCGCg -3'
miRNA:   3'- -UAUGCGGCCGUUCGCGCUACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 45188 0.71 0.335118
Target:  5'- -cGCGCCGGCGAGCGUcu---ACgGCa -3'
miRNA:   3'- uaUGCGGCCGUUCGCGcuacuUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 45074 0.66 0.648198
Target:  5'- -cGCGCCcgGGCAAGaaaaCGgcGGACUGCg -3'
miRNA:   3'- uaUGCGG--CCGUUCgc--GCuaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 45037 0.73 0.274028
Target:  5'- -gGCGCUGGC-GGCGCGcaaacgcUGAacACCGCg -3'
miRNA:   3'- uaUGCGGCCGuUCGCGCu------ACU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 44952 0.67 0.567112
Target:  5'- cUGC-CCGGCGucaucggggcgggcGGCGCGccGGGCCGg -3'
miRNA:   3'- uAUGcGGCCGU--------------UCGCGCuaCUUGGCg -5'
16999 5' -55.7 NC_004333.2 + 44426 0.66 0.63705
Target:  5'- --uCGCUGGCuGGUGCGugcGAGgCGCu -3'
miRNA:   3'- uauGCGGCCGuUCGCGCua-CUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 43747 0.66 0.63705
Target:  5'- -cGCGuuGGCGGGUuugauaggagGaCGAaaugcUGGACCGCg -3'
miRNA:   3'- uaUGCggCCGUUCG----------C-GCU-----ACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 43159 0.66 0.61475
Target:  5'- --cCGCCuGuCAAGCGCGAcgGAaggcACCGUg -3'
miRNA:   3'- uauGCGGcC-GUUCGCGCUa-CU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 42885 0.79 0.104605
Target:  5'- -aACGCCGaGUAAGCGagacgccUGAUGAGCCGCc -3'
miRNA:   3'- uaUGCGGC-CGUUCGC-------GCUACUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.