miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 66 0.68 0.524746
Target:  5'- -cAUGCCGGCGcgguGCGCGcgcccgguuGCCGCc -3'
miRNA:   3'- uaUGCGGCCGUu---CGCGCuacu-----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 171 0.69 0.434307
Target:  5'- -cGCGCgGGCAAgccagaacGCGcCGAUGuagcacAGCCGCa -3'
miRNA:   3'- uaUGCGgCCGUU--------CGC-GCUAC------UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 472 0.7 0.415026
Target:  5'- --gUGCCGGCGAGCGUGAa----CGCu -3'
miRNA:   3'- uauGCGGCCGUUCGCGCUacuugGCG- -5'
16999 5' -55.7 NC_004333.2 + 684 0.68 0.480539
Target:  5'- -cGCGCCGGCcggcgccucguucAGCGCGGcagucGCCGCc -3'
miRNA:   3'- uaUGCGGCCGu------------UCGCGCUacu--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 687 0.73 0.253531
Target:  5'- --gUGCuCGGUGAGCGCGAUcguGCCGCc -3'
miRNA:   3'- uauGCG-GCCGUUCGCGCUAcu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 756 0.9 0.017813
Target:  5'- -gGCGCCGGCGAGCgGCGAUGuAGCUGCg -3'
miRNA:   3'- uaUGCGGCCGUUCG-CGCUAC-UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 911 0.68 0.526891
Target:  5'- uGUugGUCGGCAuuGCGCccucguagcGUGcGCCGCg -3'
miRNA:   3'- -UAugCGGCCGUu-CGCGc--------UACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 1969 0.74 0.233693
Target:  5'- -aGCGCCuGGCGcugauccGGCGCGA--GACCGCc -3'
miRNA:   3'- uaUGCGG-CCGU-------UCGCGCUacUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 2001 0.73 0.258198
Target:  5'- uUACGCCGGC--GCG-GAUGAugcccgacgucacgGCCGCa -3'
miRNA:   3'- uAUGCGGCCGuuCGCgCUACU--------------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 2398 0.67 0.570411
Target:  5'- -gGCGCCGGCGGuCGCc-UGGucGCCGUa -3'
miRNA:   3'- uaUGCGGCCGUUcGCGcuACU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 2442 0.67 0.581439
Target:  5'- gGUACgGCgCGGCGAacaccuGCGCGccGAacgaaGCCGCg -3'
miRNA:   3'- -UAUG-CG-GCCGUU------CGCGCuaCU-----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 2692 0.66 0.63705
Target:  5'- -cGCGCCGGCGgcGGC-CGAcaGGCCGa -3'
miRNA:   3'- uaUGCGGCCGU--UCGcGCUacUUGGCg -5'
16999 5' -55.7 NC_004333.2 + 2997 0.66 0.648198
Target:  5'- -gACGCUcGCcGGCGCGucc-GCCGCg -3'
miRNA:   3'- uaUGCGGcCGuUCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 3048 0.71 0.335118
Target:  5'- -gACGacaGGUAGGCGCGAUc-GCCGCg -3'
miRNA:   3'- uaUGCgg-CCGUUCGCGCUAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 3149 0.67 0.592512
Target:  5'- -cGCGCCGccaGCGccacGCGCGGUcGAGCgGCc -3'
miRNA:   3'- uaUGCGGC---CGUu---CGCGCUA-CUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 3305 0.71 0.326964
Target:  5'- uGUGCGCgCGGCGGcGCGCGGuUGAauuaaacuAUCGCu -3'
miRNA:   3'- -UAUGCG-GCCGUU-CGCGCU-ACU--------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 3775 0.69 0.47437
Target:  5'- -aGC-CCGGCAGGC-CGuUGuACCGCg -3'
miRNA:   3'- uaUGcGGCCGUUCGcGCuACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 4723 0.73 0.267052
Target:  5'- uUGCGgCGcGCAAGCGCGc-GAugCGCg -3'
miRNA:   3'- uAUGCgGC-CGUUCGCGCuaCUugGCG- -5'
16999 5' -55.7 NC_004333.2 + 5063 0.67 0.559434
Target:  5'- -gACGUCGGCGcGGCGC--UGAACaGCg -3'
miRNA:   3'- uaUGCGGCCGU-UCGCGcuACUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 5196 0.67 0.559434
Target:  5'- --uCGCCuGCAGGCGCGgcGucggcACCGUc -3'
miRNA:   3'- uauGCGGcCGUUCGCGCuaCu----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.