miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 36362 0.66 0.659331
Target:  5'- -cGCGCCGuc--GCGCuGAUG-GCCGCg -3'
miRNA:   3'- uaUGCGGCcguuCGCG-CUACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 26466 0.66 0.613636
Target:  5'- -aGCuGCUGGCGcacgugcgcauagAGCGCGucGAGCUGCu -3'
miRNA:   3'- uaUG-CGGCCGU-------------UCGCGCuaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19156 0.66 0.611408
Target:  5'- -cGCGCUGGUuaucgugcuagccgcGCGCGAUGcGCaCGCc -3'
miRNA:   3'- uaUGCGGCCGuu-------------CGCGCUACuUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 20943 0.66 0.603618
Target:  5'- -gGCGCaGGCAGacGCucgaucacgacgGCGAUGuACCGCg -3'
miRNA:   3'- uaUGCGgCCGUU--CG------------CGCUACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 12082 0.66 0.603618
Target:  5'- cGUACG-UGGCuGGCGCGcagcGCCGCg -3'
miRNA:   3'- -UAUGCgGCCGuUCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9273 0.66 0.603618
Target:  5'- uGUugGCCGuGCcgaucAGCGCGAagcggcgcgGGugCGCg -3'
miRNA:   3'- -UAugCGGC-CGu----UCGCGCUa--------CUugGCG- -5'
16999 5' -55.7 NC_004333.2 + 18175 0.66 0.603618
Target:  5'- --uUGCCGGCGuGcCG-GGUGAugCGCu -3'
miRNA:   3'- uauGCGGCCGUuC-GCgCUACUugGCG- -5'
16999 5' -55.7 NC_004333.2 + 28745 0.66 0.603618
Target:  5'- ---gGCCaGCAAcuGCGCGAgc-GCCGCg -3'
miRNA:   3'- uaugCGGcCGUU--CGCGCUacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 48095 0.66 0.603618
Target:  5'- -gGCGCaggCGGCAaccgGGCGCGcgc-ACCGCg -3'
miRNA:   3'- uaUGCG---GCCGU----UCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 17802 0.66 0.61475
Target:  5'- -gACGuUCGGCAu-CGCGGUcgacgauccGAACCGCg -3'
miRNA:   3'- uaUGC-GGCCGUucGCGCUA---------CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 43159 0.66 0.61475
Target:  5'- --cCGCCuGuCAAGCGCGAcgGAaggcACCGUg -3'
miRNA:   3'- uauGCGGcC-GUUCGCGCUa-CU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 46907 0.66 0.61475
Target:  5'- -cGCGCCaGGC-GGCGCGccaagGAGCaCGUc -3'
miRNA:   3'- uaUGCGG-CCGuUCGCGCua---CUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 24643 0.66 0.659331
Target:  5'- cUACGCagauCGGCGgcuacccgaaaGGCGCGGU--GCUGCa -3'
miRNA:   3'- uAUGCG----GCCGU-----------UCGCGCUAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 22768 0.66 0.658219
Target:  5'- --cCGCCGGCAcgcugcaGGCGCGcuc-GCCGg -3'
miRNA:   3'- uauGCGGCCGU-------UCGCGCuacuUGGCg -5'
16999 5' -55.7 NC_004333.2 + 19039 0.66 0.648198
Target:  5'- cUACGCCGauGCGauGGCG-GAUGcuGACCGUc -3'
miRNA:   3'- uAUGCGGC--CGU--UCGCgCUAC--UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 39951 0.66 0.648198
Target:  5'- -cGCGCgGGCcGGCGUcAUccuGCCGCg -3'
miRNA:   3'- uaUGCGgCCGuUCGCGcUAcu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 29720 0.66 0.63705
Target:  5'- --gUGCCGGguuGCGCGAacuuuuUGAACgCGCu -3'
miRNA:   3'- uauGCGGCCguuCGCGCU------ACUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 5952 0.66 0.635935
Target:  5'- --uUGUCGGCcgucGUGCGGUcgaagucGAGCCGCa -3'
miRNA:   3'- uauGCGGCCGuu--CGCGCUA-------CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 24277 0.66 0.625897
Target:  5'- -cGCGCCguucGGCuuccGCaCGAUGAACgGCg -3'
miRNA:   3'- uaUGCGG----CCGuu--CGcGCUACUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 38558 0.66 0.625897
Target:  5'- --cCGCCGGCAgccGGUGCGc--AACCGg -3'
miRNA:   3'- uauGCGGCCGU---UCGCGCuacUUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.