miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 26529 0.79 0.111085
Target:  5'- -cGCGCCGaCAGGUGCGgcGAACUGCa -3'
miRNA:   3'- uaUGCGGCcGUUCGCGCuaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19554 0.71 0.36832
Target:  5'- -gGCGCCGGuCGcacggucGGCGCGGcacaagggGAAUCGCg -3'
miRNA:   3'- uaUGCGGCC-GU-------UCGCGCUa-------CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19605 0.71 0.369201
Target:  5'- -gACGCgaacaaggucaCGGCGAGCGCGgcGAG-CGCg -3'
miRNA:   3'- uaUGCG-----------GCCGUUCGCGCuaCUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 14713 0.66 0.659331
Target:  5'- aGUGCGCCaagcGGCAGGuCGgGAUuGuAGCCGa -3'
miRNA:   3'- -UAUGCGG----CCGUUC-GCgCUA-C-UUGGCg -5'
16999 5' -55.7 NC_004333.2 + 687 0.73 0.253531
Target:  5'- --gUGCuCGGUGAGCGCGAUcguGCCGCc -3'
miRNA:   3'- uauGCG-GCCGUUCGCGCUAcu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 8943 0.73 0.257527
Target:  5'- -cGCGCCGGCGcuguccaucgcguGCGCGGgcuggaucgUGGGCCGUg -3'
miRNA:   3'- uaUGCGGCCGUu------------CGCGCU---------ACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 6667 0.73 0.274028
Target:  5'- -cGCGCuCGaGCAGGCGCGcAUccGCCGCu -3'
miRNA:   3'- uaUGCG-GC-CGUUCGCGC-UAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 45037 0.73 0.274028
Target:  5'- -gGCGCUGGC-GGCGCGcaaacgcUGAacACCGCg -3'
miRNA:   3'- uaUGCGGCCGuUCGCGCu------ACU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 7987 0.71 0.343419
Target:  5'- --uCGUCGGCucuGCgGUGAUGAacGCCGCg -3'
miRNA:   3'- uauGCGGCCGuu-CG-CGCUACU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 48043 0.71 0.360461
Target:  5'- -gGCGCUGGUGGuuugugcucauGCGCGAUGucguGCUGCu -3'
miRNA:   3'- uaUGCGGCCGUU-----------CGCGCUACu---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 24291 0.71 0.351867
Target:  5'- -cGC-CCGGCGAcuGCGCGAccUGGaacaGCCGCg -3'
miRNA:   3'- uaUGcGGCCGUU--CGCGCU--ACU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 3305 0.71 0.326964
Target:  5'- uGUGCGCgCGGCGGcGCGCGGuUGAauuaaacuAUCGCu -3'
miRNA:   3'- -UAUGCG-GCCGUU-CGCGCU-ACU--------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 29882 0.77 0.143324
Target:  5'- --uCGUCGGCGAagcgcuGCGCGAUcGGGCCGCg -3'
miRNA:   3'- uauGCGGCCGUU------CGCGCUA-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 20689 0.71 0.360461
Target:  5'- -gACGCCGGauGGCGUGuacGGAUCGCa -3'
miRNA:   3'- uaUGCGGCCguUCGCGCua-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 40896 0.75 0.199546
Target:  5'- cUGCGCCGGCuuGCGC-AUGAAagUCGCa -3'
miRNA:   3'- uAUGCGGCCGuuCGCGcUACUU--GGCG- -5'
16999 5' -55.7 NC_004333.2 + 13851 0.72 0.303392
Target:  5'- -gGCGCCGcGuCGAGCGCauUGAgcgcGCCGCg -3'
miRNA:   3'- uaUGCGGC-C-GUUCGCGcuACU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9734 0.71 0.360461
Target:  5'- -cGCGUCGGCGacaugAGCGCcg-GAugCGCg -3'
miRNA:   3'- uaUGCGGCCGU-----UCGCGcuaCUugGCG- -5'
16999 5' -55.7 NC_004333.2 + 35470 0.71 0.369201
Target:  5'- -aACGUCGGCAccgucaacgGGC-CGGUGAgcguGCCGCc -3'
miRNA:   3'- uaUGCGGCCGU---------UCGcGCUACU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 47502 0.74 0.228183
Target:  5'- -gGCGCCGGCcGGCGCGAccaguacauUGAA-UGCa -3'
miRNA:   3'- uaUGCGGCCGuUCGCGCU---------ACUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 2001 0.73 0.258198
Target:  5'- uUACGCCGGC--GCG-GAUGAugcccgacgucacgGCCGCa -3'
miRNA:   3'- uAUGCGGCCGuuCGCgCUACU--------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.