Results 1 - 20 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 37620 | 0.67 | 0.559434 |
Target: 5'- gAUGCGCCcGauaAAcGCGCGAUG-GCCGUc -3' miRNA: 3'- -UAUGCGGcCg--UU-CGCGCUACuUGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 26466 | 0.66 | 0.613636 |
Target: 5'- -aGCuGCUGGCGcacgugcgcauagAGCGCGucGAGCUGCu -3' miRNA: 3'- uaUG-CGGCCGU-------------UCGCGCuaCUUGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 19156 | 0.66 | 0.611408 |
Target: 5'- -cGCGCUGGUuaucgugcuagccgcGCGCGAUGcGCaCGCc -3' miRNA: 3'- uaUGCGGCCGuu-------------CGCGCUACuUG-GCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 20943 | 0.66 | 0.603618 |
Target: 5'- -gGCGCaGGCAGacGCucgaucacgacgGCGAUGuACCGCg -3' miRNA: 3'- uaUGCGgCCGUU--CG------------CGCUACuUGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 12082 | 0.66 | 0.603618 |
Target: 5'- cGUACG-UGGCuGGCGCGcagcGCCGCg -3' miRNA: 3'- -UAUGCgGCCGuUCGCGCuacuUGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 9273 | 0.66 | 0.603618 |
Target: 5'- uGUugGCCGuGCcgaucAGCGCGAagcggcgcgGGugCGCg -3' miRNA: 3'- -UAugCGGC-CGu----UCGCGCUa--------CUugGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 3149 | 0.67 | 0.592512 |
Target: 5'- -cGCGCCGccaGCGccacGCGCGGUcGAGCgGCc -3' miRNA: 3'- uaUGCGGC---CGUu---CGCGCUA-CUUGgCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 32706 | 0.67 | 0.581439 |
Target: 5'- uUGCGCuCGGCAcgccaAGCGCGccGAucgaccCCGUu -3' miRNA: 3'- uAUGCG-GCCGU-----UCGCGCuaCUu-----GGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 44952 | 0.67 | 0.567112 |
Target: 5'- cUGC-CCGGCGucaucggggcgggcGGCGCGccGGGCCGg -3' miRNA: 3'- uAUGcGGCCGU--------------UCGCGCuaCUUGGCg -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 17802 | 0.66 | 0.61475 |
Target: 5'- -gACGuUCGGCAu-CGCGGUcgacgauccGAACCGCg -3' miRNA: 3'- uaUGC-GGCCGUucGCGCUA---------CUUGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 43159 | 0.66 | 0.61475 |
Target: 5'- --cCGCCuGuCAAGCGCGAcgGAaggcACCGUg -3' miRNA: 3'- uauGCGGcC-GUUCGCGCUa-CU----UGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 46907 | 0.66 | 0.61475 |
Target: 5'- -cGCGCCaGGC-GGCGCGccaagGAGCaCGUc -3' miRNA: 3'- uaUGCGG-CCGuUCGCGCua---CUUG-GCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 24643 | 0.66 | 0.659331 |
Target: 5'- cUACGCagauCGGCGgcuacccgaaaGGCGCGGU--GCUGCa -3' miRNA: 3'- uAUGCG----GCCGU-----------UCGCGCUAcuUGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 22768 | 0.66 | 0.658219 |
Target: 5'- --cCGCCGGCAcgcugcaGGCGCGcuc-GCCGg -3' miRNA: 3'- uauGCGGCCGU-------UCGCGCuacuUGGCg -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 19039 | 0.66 | 0.648198 |
Target: 5'- cUACGCCGauGCGauGGCG-GAUGcuGACCGUc -3' miRNA: 3'- uAUGCGGC--CGU--UCGCgCUAC--UUGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 39951 | 0.66 | 0.648198 |
Target: 5'- -cGCGCgGGCcGGCGUcAUccuGCCGCg -3' miRNA: 3'- uaUGCGgCCGuUCGCGcUAcu-UGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 29720 | 0.66 | 0.63705 |
Target: 5'- --gUGCCGGguuGCGCGAacuuuuUGAACgCGCu -3' miRNA: 3'- uauGCGGCCguuCGCGCU------ACUUG-GCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 5952 | 0.66 | 0.635935 |
Target: 5'- --uUGUCGGCcgucGUGCGGUcgaagucGAGCCGCa -3' miRNA: 3'- uauGCGGCCGuu--CGCGCUA-------CUUGGCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 24277 | 0.66 | 0.625897 |
Target: 5'- -cGCGCCguucGGCuuccGCaCGAUGAACgGCg -3' miRNA: 3'- uaUGCGG----CCGuu--CGcGCUACUUGgCG- -5' |
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16999 | 5' | -55.7 | NC_004333.2 | + | 38558 | 0.66 | 0.625897 |
Target: 5'- --cCGCCGGCAgccGGUGCGc--AACCGg -3' miRNA: 3'- uauGCGGCCGU---UCGCGCuacUUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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