miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 45537 1.1 0.00055
Target:  5'- gAUACGCCGGCAAGCGCGAUGAACCGCg -3'
miRNA:   3'- -UAUGCGGCCGUUCGCGCUACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 756 0.9 0.017813
Target:  5'- -gGCGCCGGCGAGCgGCGAUGuAGCUGCg -3'
miRNA:   3'- uaUGCGGCCGUUCG-CGCUAC-UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 42885 0.79 0.104605
Target:  5'- -aACGCCGaGUAAGCGagacgccUGAUGAGCCGCc -3'
miRNA:   3'- uaUGCGGC-CGUUCGC-------GCUACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 26529 0.79 0.111085
Target:  5'- -cGCGCCGaCAGGUGCGgcGAACUGCa -3'
miRNA:   3'- uaUGCGGCcGUUCGCGCuaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19280 0.77 0.13511
Target:  5'- uAUGCGCCGGCcugcgccGAGCGCGAUcGcGCgGCa -3'
miRNA:   3'- -UAUGCGGCCG-------UUCGCGCUA-CuUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 29882 0.77 0.143324
Target:  5'- --uCGUCGGCGAagcgcuGCGCGAUcGGGCCGCg -3'
miRNA:   3'- uauGCGGCCGUU------CGCGCUA-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 28741 0.77 0.15585
Target:  5'- -gGCGCUGGCAcGCGCG-UGAACguCGCg -3'
miRNA:   3'- uaUGCGGCCGUuCGCGCuACUUG--GCG- -5'
16999 5' -55.7 NC_004333.2 + 6569 0.75 0.183906
Target:  5'- ---aGCaCGaGCGAGCGCG-UGGGCCGCa -3'
miRNA:   3'- uaugCG-GC-CGUUCGCGCuACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 40896 0.75 0.199546
Target:  5'- cUGCGCCGGCuuGCGC-AUGAAagUCGCa -3'
miRNA:   3'- uAUGCGGCCGuuCGCGcUACUU--GGCG- -5'
16999 5' -55.7 NC_004333.2 + 47987 0.74 0.22219
Target:  5'- ---aGCCGGCGGGCGCacgggcaGUGGACuCGCg -3'
miRNA:   3'- uaugCGGCCGUUCGCGc------UACUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 47502 0.74 0.228183
Target:  5'- -gGCGCCGGCcGGCGCGAccaguacauUGAA-UGCa -3'
miRNA:   3'- uaUGCGGCCGuUCGCGCU---------ACUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 1969 0.74 0.233693
Target:  5'- -aGCGCCuGGCGcugauccGGCGCGA--GACCGCc -3'
miRNA:   3'- uaUGCGG-CCGU-------UCGCGCUacUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9476 0.73 0.245048
Target:  5'- -aGCGCCGGCGgcugcgggaauuucAGCGCGgcGGccaGCUGCu -3'
miRNA:   3'- uaUGCGGCCGU--------------UCGCGCuaCU---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 18204 0.73 0.246985
Target:  5'- -gGCGCCGGUGgcAGCGCG----GCCGCg -3'
miRNA:   3'- uaUGCGGCCGU--UCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 687 0.73 0.253531
Target:  5'- --gUGCuCGGUGAGCGCGAUcguGCCGCc -3'
miRNA:   3'- uauGCG-GCCGUUCGCGCUAcu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 8943 0.73 0.257527
Target:  5'- -cGCGCCGGCGcuguccaucgcguGCGCGGgcuggaucgUGGGCCGUg -3'
miRNA:   3'- uaUGCGGCCGUu------------CGCGCU---------ACUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 2001 0.73 0.258198
Target:  5'- uUACGCCGGC--GCG-GAUGAugcccgacgucacgGCCGCa -3'
miRNA:   3'- uAUGCGGCCGuuCGCgCUACU--------------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 4723 0.73 0.267052
Target:  5'- uUGCGgCGcGCAAGCGCGc-GAugCGCg -3'
miRNA:   3'- uAUGCgGC-CGUUCGCGCuaCUugGCG- -5'
16999 5' -55.7 NC_004333.2 + 6667 0.73 0.274028
Target:  5'- -cGCGCuCGaGCAGGCGCGcAUccGCCGCu -3'
miRNA:   3'- uaUGCG-GC-CGUUCGCGC-UAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 39166 0.73 0.274028
Target:  5'- -cGCGCCgccuGGCAAGcCGCGAac-GCCGCg -3'
miRNA:   3'- uaUGCGG----CCGUUC-GCGCUacuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.