miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 6667 0.73 0.274028
Target:  5'- -cGCGCuCGaGCAGGCGCGcAUccGCCGCu -3'
miRNA:   3'- uaUGCG-GC-CGUUCGCGC-UAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 35687 0.73 0.281149
Target:  5'- cGUAUGCCGGCAAGCuggacGCGaAUGAcgACCcggGCg -3'
miRNA:   3'- -UAUGCGGCCGUUCG-----CGC-UACU--UGG---CG- -5'
16999 5' -55.7 NC_004333.2 + 37510 0.72 0.286221
Target:  5'- cGUGCaCCGGCcGGCGCGAccgUGAcgucaccuuucuucGCCGCc -3'
miRNA:   3'- -UAUGcGGCCGuUCGCGCU---ACU--------------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 40308 0.72 0.286221
Target:  5'- -gACGCgauggGGCGAGCGCGAgcugGAaauggccggcgcagGCCGCg -3'
miRNA:   3'- uaUGCGg----CCGUUCGCGCUa---CU--------------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 37425 0.72 0.303392
Target:  5'- uUGCGCCGGgccGCGCGGUacGAuacGCCGCc -3'
miRNA:   3'- uAUGCGGCCguuCGCGCUA--CU---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 13851 0.72 0.303392
Target:  5'- -gGCGCCGcGuCGAGCGCauUGAgcgcGCCGCg -3'
miRNA:   3'- uaUGCGGC-C-GUUCGCGcuACU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 38590 0.72 0.311101
Target:  5'- -cGCGCCGGCuGGCGCugaaGGUG-GCgGCa -3'
miRNA:   3'- uaUGCGGCCGuUCGCG----CUACuUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 41517 0.72 0.318959
Target:  5'- -cGCGCCuGCucGAGCGCGccGAGCgCGCu -3'
miRNA:   3'- uaUGCGGcCG--UUCGCGCuaCUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 13015 0.71 0.326964
Target:  5'- --cUGCCGGCGauggcGGUGCGAUGuuuuACCGg -3'
miRNA:   3'- uauGCGGCCGU-----UCGCGCUACu---UGGCg -5'
16999 5' -55.7 NC_004333.2 + 32366 0.71 0.326964
Target:  5'- cGUGCGCaGGCGucGGCGCGAUcGAAC-GCu -3'
miRNA:   3'- -UAUGCGgCCGU--UCGCGCUA-CUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 3305 0.71 0.326964
Target:  5'- uGUGCGCgCGGCGGcGCGCGGuUGAauuaaacuAUCGCu -3'
miRNA:   3'- -UAUGCG-GCCGUU-CGCGCU-ACU--------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 45188 0.71 0.335118
Target:  5'- -cGCGCCGGCGAGCGUcu---ACgGCa -3'
miRNA:   3'- uaUGCGGCCGUUCGCGcuacuUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 3048 0.71 0.335118
Target:  5'- -gACGacaGGUAGGCGCGAUc-GCCGCg -3'
miRNA:   3'- uaUGCgg-CCGUUCGCGCUAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 14871 0.71 0.343419
Target:  5'- -cGCGCCGGUuGGCuCGAUGcGGCCGa -3'
miRNA:   3'- uaUGCGGCCGuUCGcGCUAC-UUGGCg -5'
16999 5' -55.7 NC_004333.2 + 7987 0.71 0.343419
Target:  5'- --uCGUCGGCucuGCgGUGAUGAacGCCGCg -3'
miRNA:   3'- uauGCGGCCGuu-CG-CGCUACU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 22523 0.71 0.343419
Target:  5'- -gACgGCCGGCAAGaCGCuuUcGACCGCg -3'
miRNA:   3'- uaUG-CGGCCGUUC-GCGcuAcUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 22548 0.71 0.343419
Target:  5'- --uUGCCGaGCGAcgagcGCGCGGUGAAacCCGCc -3'
miRNA:   3'- uauGCGGC-CGUU-----CGCGCUACUU--GGCG- -5'
16999 5' -55.7 NC_004333.2 + 46302 0.71 0.351867
Target:  5'- --cCGCCaauccgGGcCAGGCGCGucaGAACCGCa -3'
miRNA:   3'- uauGCGG------CC-GUUCGCGCua-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 24291 0.71 0.351867
Target:  5'- -cGC-CCGGCGAcuGCGCGAccUGGaacaGCCGCg -3'
miRNA:   3'- uaUGcGGCCGUU--CGCGCU--ACU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 10767 0.71 0.360461
Target:  5'- -cACGCCGcgcaaaccGCGAGCGCcgacguaggacGAUGAggacgGCCGCg -3'
miRNA:   3'- uaUGCGGC--------CGUUCGCG-----------CUACU-----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.