miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 30954 0.7 0.385294
Target:  5'- gAUACGCCGGCGgccgucaAGCGCGAcuccauaaagcccUGcuguugcgGGCUGCu -3'
miRNA:   3'- -UAUGCGGCCGU-------UCGCGCU-------------AC--------UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19605 0.71 0.369201
Target:  5'- -gACGCgaacaaggucaCGGCGAGCGCGgcGAG-CGCg -3'
miRNA:   3'- uaUGCG-----------GCCGUUCGCGCuaCUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 3305 0.71 0.326964
Target:  5'- uGUGCGCgCGGCGGcGCGCGGuUGAauuaaacuAUCGCu -3'
miRNA:   3'- -UAUGCG-GCCGUU-CGCGCU-ACU--------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 47502 0.74 0.228183
Target:  5'- -gGCGCCGGCcGGCGCGAccaguacauUGAA-UGCa -3'
miRNA:   3'- uaUGCGGCCGuUCGCGCU---------ACUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 32187 0.69 0.444141
Target:  5'- --uCGCCGagguucaggacGaCGAGCGCGAUGAGCaCGUc -3'
miRNA:   3'- uauGCGGC-----------C-GUUCGCGCUACUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 8865 0.7 0.415026
Target:  5'- gGUAuCG-CGGCugcGGCGCGGUuAGCCGCg -3'
miRNA:   3'- -UAU-GCgGCCGu--UCGCGCUAcUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19554 0.71 0.36832
Target:  5'- -gGCGCCGGuCGcacggucGGCGCGGcacaagggGAAUCGCg -3'
miRNA:   3'- uaUGCGGCC-GU-------UCGCGCUa-------CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 40896 0.75 0.199546
Target:  5'- cUGCGCCGGCuuGCGC-AUGAAagUCGCa -3'
miRNA:   3'- uAUGCGGCCGuuCGCGcUACUU--GGCG- -5'
16999 5' -55.7 NC_004333.2 + 37158 0.7 0.415026
Target:  5'- -cACGUgCGGCAucccgcAGCGCGgcGAcacGCCGCu -3'
miRNA:   3'- uaUGCG-GCCGU------UCGCGCuaCU---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 29882 0.77 0.143324
Target:  5'- --uCGUCGGCGAagcgcuGCGCGAUcGGGCCGCg -3'
miRNA:   3'- uauGCGGCCGUU------CGCGCUA-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 35470 0.71 0.369201
Target:  5'- -aACGUCGGCAccgucaacgGGC-CGGUGAgcguGCCGCc -3'
miRNA:   3'- uaUGCGGCCGU---------UCGcGCUACU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 38389 0.7 0.393513
Target:  5'- gGUGCGCCGGCGugacgccGGCcacggucaagacgGCGAUcGAgacgcuuGCCGCg -3'
miRNA:   3'- -UAUGCGGCCGU-------UCG-------------CGCUA-CU-------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 20689 0.71 0.360461
Target:  5'- -gACGCCGGauGGCGUGuacGGAUCGCa -3'
miRNA:   3'- uaUGCGGCCguUCGCGCua-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 7987 0.71 0.343419
Target:  5'- --uCGUCGGCucuGCgGUGAUGAacGCCGCg -3'
miRNA:   3'- uauGCGGCCGuu-CG-CGCUACU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 6667 0.73 0.274028
Target:  5'- -cGCGCuCGaGCAGGCGCGcAUccGCCGCu -3'
miRNA:   3'- uaUGCG-GC-CGUUCGCGC-UAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 687 0.73 0.253531
Target:  5'- --gUGCuCGGUGAGCGCGAUcguGCCGCc -3'
miRNA:   3'- uauGCG-GCCGUUCGCGCUAcu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 22892 0.69 0.464177
Target:  5'- -gGCGCucgugaCGaGCAgaAGCGCGGUGcuGCCGCu -3'
miRNA:   3'- uaUGCG------GC-CGU--UCGCGCUACu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 29016 0.69 0.450101
Target:  5'- -cGCGCgCGGCuagcacgauaaccAGCGCGAgc-ACCGCg -3'
miRNA:   3'- uaUGCG-GCCGu------------UCGCGCUacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 5544 0.69 0.443152
Target:  5'- ---gGCCGGCGacggcuuGGCGCGAgugcaGACCGUu -3'
miRNA:   3'- uaugCGGCCGU-------UCGCGCUac---UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 28428 0.69 0.433331
Target:  5'- -cGCGCCGGUGucGCGCuGAUucauguacuugucGGGCCGCc -3'
miRNA:   3'- uaUGCGGCCGUu-CGCG-CUA-------------CUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.