Results 41 - 60 of 166 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 11721 | 0.69 | 0.444141 |
Target: 5'- --gUGCUGGCGuccuGCGCGAUGucCgGCa -3' miRNA: 3'- uauGCGGCCGUu---CGCGCUACuuGgCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 19554 | 0.71 | 0.36832 |
Target: 5'- -gGCGCCGGuCGcacggucGGCGCGGcacaagggGAAUCGCg -3' miRNA: 3'- uaUGCGGCC-GU-------UCGCGCUa-------CUUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 40896 | 0.75 | 0.199546 |
Target: 5'- cUGCGCCGGCuuGCGC-AUGAAagUCGCa -3' miRNA: 3'- uAUGCGGCCGuuCGCGcUACUU--GGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 8788 | 0.69 | 0.444141 |
Target: 5'- --uCGCCGGCAaugccuugcgccGGCGUGAUGuaGACCu- -3' miRNA: 3'- uauGCGGCCGU------------UCGCGCUAC--UUGGcg -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 29882 | 0.77 | 0.143324 |
Target: 5'- --uCGUCGGCGAagcgcuGCGCGAUcGGGCCGCg -3' miRNA: 3'- uauGCGGCCGUU------CGCGCUA-CUUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 38227 | 0.67 | 0.570411 |
Target: 5'- ---aGUCGaGCAAGCGCGccGcGCCGUu -3' miRNA: 3'- uaugCGGC-CGUUCGCGCuaCuUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 687 | 0.73 | 0.253531 |
Target: 5'- --gUGCuCGGUGAGCGCGAUcguGCCGCc -3' miRNA: 3'- uauGCG-GCCGUUCGCGCUAcu-UGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 37404 | 0.67 | 0.556152 |
Target: 5'- cUACGUCGGCGcucgcgguuugcgcGGCGUGcacGUGuACUGCg -3' miRNA: 3'- uAUGCGGCCGU--------------UCGCGC---UACuUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 31098 | 0.68 | 0.537666 |
Target: 5'- -gGCGCCuGGCccgucagcGGCGCGAguuGCUGCu -3' miRNA: 3'- uaUGCGG-CCGu-------UCGCGCUacuUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 33413 | 0.68 | 0.516198 |
Target: 5'- -gGCGCa-GCGAcuGCGCGccGAACCGUa -3' miRNA: 3'- uaUGCGgcCGUU--CGCGCuaCUUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 31009 | 0.68 | 0.484674 |
Target: 5'- --uCGCgCGGUAGGUGCGcUGcAGCUGCu -3' miRNA: 3'- uauGCG-GCCGUUCGCGCuAC-UUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 22892 | 0.69 | 0.464177 |
Target: 5'- -gGCGCucgugaCGaGCAgaAGCGCGGUGcuGCCGCu -3' miRNA: 3'- uaUGCG------GC-CGU--UCGCGCUACu-UGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 29016 | 0.69 | 0.450101 |
Target: 5'- -cGCGCgCGGCuagcacgauaaccAGCGCGAgc-ACCGCg -3' miRNA: 3'- uaUGCG-GCCGu------------UCGCGCUacuUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 14073 | 0.69 | 0.434307 |
Target: 5'- gGUGCGCaGGCAaagcugaugcAGCGCGAUcGucauGCCGUc -3' miRNA: 3'- -UAUGCGgCCGU----------UCGCGCUA-Cu---UGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 37158 | 0.7 | 0.415026 |
Target: 5'- -cACGUgCGGCAucccgcAGCGCGgcGAcacGCCGCu -3' miRNA: 3'- uaUGCG-GCCGU------UCGCGCuaCU---UGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 30954 | 0.7 | 0.385294 |
Target: 5'- gAUACGCCGGCGgccgucaAGCGCGAcuccauaaagcccUGcuguugcgGGCUGCu -3' miRNA: 3'- -UAUGCGGCCGU-------UCGCGCU-------------AC--------UUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 19605 | 0.71 | 0.369201 |
Target: 5'- -gACGCgaacaaggucaCGGCGAGCGCGgcGAG-CGCg -3' miRNA: 3'- uaUGCG-----------GCCGUUCGCGCuaCUUgGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 20689 | 0.71 | 0.360461 |
Target: 5'- -gACGCCGGauGGCGUGuacGGAUCGCa -3' miRNA: 3'- uaUGCGGCCguUCGCGCua-CUUGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 7987 | 0.71 | 0.343419 |
Target: 5'- --uCGUCGGCucuGCgGUGAUGAacGCCGCg -3' miRNA: 3'- uauGCGGCCGuu-CG-CGCUACU--UGGCG- -5' |
|||||||
16999 | 5' | -55.7 | NC_004333.2 | + | 6667 | 0.73 | 0.274028 |
Target: 5'- -cGCGCuCGaGCAGGCGCGcAUccGCCGCu -3' miRNA: 3'- uaUGCG-GC-CGUUCGCGC-UAcuUGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home