miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 9939 0.67 0.548516
Target:  5'- --uCGCCGcGCAGGUGUuugccgucGAACCGCa -3'
miRNA:   3'- uauGCGGC-CGUUCGCGcua-----CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 10767 0.71 0.360461
Target:  5'- -cACGCCGcgcaaaccGCGAGCGCcgacguaggacGAUGAggacgGCCGCg -3'
miRNA:   3'- uaUGCGGC--------CGUUCGCG-----------CUACU-----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 10976 0.7 0.405583
Target:  5'- -cGCGCggaacuCGGCAccGGCGCGcgucGUGAGCgGCg -3'
miRNA:   3'- uaUGCG------GCCGU--UCGCGC----UACUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 11306 0.66 0.61475
Target:  5'- cUGCGCCGucgccuuguuGCAcuggucgcGCGCGAUGAagGCgGCg -3'
miRNA:   3'- uAUGCGGC----------CGUu-------CGCGCUACU--UGgCG- -5'
16999 5' -55.7 NC_004333.2 + 11721 0.69 0.444141
Target:  5'- --gUGCUGGCGuccuGCGCGAUGucCgGCa -3'
miRNA:   3'- uauGCGGCCGUu---CGCGCUACuuGgCG- -5'
16999 5' -55.7 NC_004333.2 + 12082 0.66 0.603618
Target:  5'- cGUACG-UGGCuGGCGCGcagcGCCGCg -3'
miRNA:   3'- -UAUGCgGCCGuUCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 12806 0.66 0.648198
Target:  5'- ---aGCCGGUcGGCGUGAUaccGAGCaGCu -3'
miRNA:   3'- uaugCGGCCGuUCGCGCUA---CUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 13015 0.71 0.326964
Target:  5'- --cUGCCGGCGauggcGGUGCGAUGuuuuACCGg -3'
miRNA:   3'- uauGCGGCCGU-----UCGCGCUACu---UGGCg -5'
16999 5' -55.7 NC_004333.2 + 13851 0.72 0.303392
Target:  5'- -gGCGCCGcGuCGAGCGCauUGAgcgcGCCGCg -3'
miRNA:   3'- uaUGCGGC-C-GUUCGCGcuACU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 13895 0.68 0.484674
Target:  5'- ---gGCCGGCAcgggcuGCGCGgcGGcuGCCGUg -3'
miRNA:   3'- uaugCGGCCGUu-----CGCGCuaCU--UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 13971 0.7 0.378085
Target:  5'- -gGCGgCGGCcGGUGCGcgcGAGCUGCg -3'
miRNA:   3'- uaUGCgGCCGuUCGCGCua-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 14073 0.69 0.434307
Target:  5'- gGUGCGCaGGCAaagcugaugcAGCGCGAUcGucauGCCGUc -3'
miRNA:   3'- -UAUGCGgCCGU----------UCGCGCUA-Cu---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 14713 0.66 0.659331
Target:  5'- aGUGCGCCaagcGGCAGGuCGgGAUuGuAGCCGa -3'
miRNA:   3'- -UAUGCGG----CCGUUC-GCgCUA-C-UUGGCg -5'
16999 5' -55.7 NC_004333.2 + 14871 0.71 0.343419
Target:  5'- -cGCGCCGGUuGGCuCGAUGcGGCCGa -3'
miRNA:   3'- uaUGCGGCCGuUCGcGCUAC-UUGGCg -5'
16999 5' -55.7 NC_004333.2 + 16768 0.67 0.592512
Target:  5'- cUGCGCCgacacGGCAAG-GCGu---ACCGCg -3'
miRNA:   3'- uAUGCGG-----CCGUUCgCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 17026 0.68 0.537666
Target:  5'- -gAUGCCaaGGCGGGCGgCGAUGcauUCGCc -3'
miRNA:   3'- uaUGCGG--CCGUUCGC-GCUACuu-GGCG- -5'
16999 5' -55.7 NC_004333.2 + 17498 0.7 0.415026
Target:  5'- --cCGCCGGCGgcGGCGCGA---ACgGCu -3'
miRNA:   3'- uauGCGGCCGU--UCGCGCUacuUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 17621 0.68 0.537666
Target:  5'- -gACGCCGGCc-GCGCccgGuGCCGUg -3'
miRNA:   3'- uaUGCGGCCGuuCGCGcuaCuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 17766 0.67 0.592512
Target:  5'- ---aGCCGGCGccGCGCGGU-AAUUGCa -3'
miRNA:   3'- uaugCGGCCGUu-CGCGCUAcUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 17802 0.66 0.61475
Target:  5'- -gACGuUCGGCAu-CGCGGUcgacgauccGAACCGCg -3'
miRNA:   3'- uaUGC-GGCCGUucGCGCUA---------CUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.