miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 10767 0.71 0.360461
Target:  5'- -cACGCCGcgcaaaccGCGAGCGCcgacguaggacGAUGAggacgGCCGCg -3'
miRNA:   3'- uaUGCGGC--------CGUUCGCG-----------CUACU-----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 20689 0.71 0.360461
Target:  5'- -gACGCCGGauGGCGUGuacGGAUCGCa -3'
miRNA:   3'- uaUGCGGCCguUCGCGCua-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 9734 0.71 0.360461
Target:  5'- -cGCGUCGGCGacaugAGCGCcg-GAugCGCg -3'
miRNA:   3'- uaUGCGGCCGU-----UCGCGcuaCUugGCG- -5'
16999 5' -55.7 NC_004333.2 + 48043 0.71 0.360461
Target:  5'- -gGCGCUGGUGGuuugugcucauGCGCGAUGucguGCUGCu -3'
miRNA:   3'- uaUGCGGCCGUU-----------CGCGCUACu---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19554 0.71 0.36832
Target:  5'- -gGCGCCGGuCGcacggucGGCGCGGcacaagggGAAUCGCg -3'
miRNA:   3'- uaUGCGGCC-GU-------UCGCGCUa-------CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 35470 0.71 0.369201
Target:  5'- -aACGUCGGCAccgucaacgGGC-CGGUGAgcguGCCGCc -3'
miRNA:   3'- uaUGCGGCCGU---------UCGcGCUACU----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19605 0.71 0.369201
Target:  5'- -gACGCgaacaaggucaCGGCGAGCGCGgcGAG-CGCg -3'
miRNA:   3'- uaUGCG-----------GCCGUUCGCGCuaCUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 9103 0.7 0.378085
Target:  5'- uUGCGCUGuCGAGCGCaAUGucGCCGCc -3'
miRNA:   3'- uAUGCGGCcGUUCGCGcUACu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 13971 0.7 0.378085
Target:  5'- -gGCGgCGGCcGGUGCGcgcGAGCUGCg -3'
miRNA:   3'- uaUGCgGCCGuUCGCGCua-CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 30954 0.7 0.385294
Target:  5'- gAUACGCCGGCGgccgucaAGCGCGAcuccauaaagcccUGcuguugcgGGCUGCu -3'
miRNA:   3'- -UAUGCGGCCGU-------UCGCGCU-------------AC--------UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 36825 0.7 0.387111
Target:  5'- -aGCG-CGGCAAgGUGaCGAcGAACCGCg -3'
miRNA:   3'- uaUGCgGCCGUU-CGC-GCUaCUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 38389 0.7 0.393513
Target:  5'- gGUGCGCCGGCGugacgccGGCcacggucaagacgGCGAUcGAgacgcuuGCCGCg -3'
miRNA:   3'- -UAUGCGGCCGU-------UCG-------------CGCUA-CU-------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 35867 0.7 0.396278
Target:  5'- -cGCGCgaGGCuGGCGCGcagGAcGCCGCa -3'
miRNA:   3'- uaUGCGg-CCGuUCGCGCua-CU-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 27564 0.7 0.396278
Target:  5'- aAUugGCCcGacuGCGCGAggccGAGCCGCg -3'
miRNA:   3'- -UAugCGGcCguuCGCGCUa---CUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19792 0.7 0.396278
Target:  5'- --gUGCCGcGCGuugAGUGCGAUGcGCUGCu -3'
miRNA:   3'- uauGCGGC-CGU---UCGCGCUACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 8234 0.7 0.396278
Target:  5'- -gACGCCGGCccGCGCGAgguucUGAAUaCGUu -3'
miRNA:   3'- uaUGCGGCCGuuCGCGCU-----ACUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 10976 0.7 0.405583
Target:  5'- -cGCGCggaacuCGGCAccGGCGCGcgucGUGAGCgGCg -3'
miRNA:   3'- uaUGCG------GCCGU--UCGCGC----UACUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 46187 0.7 0.405583
Target:  5'- -cGCGCCGGCGuaaCGCuGAcGAACuCGCa -3'
miRNA:   3'- uaUGCGGCCGUuc-GCG-CUaCUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 472 0.7 0.415026
Target:  5'- --gUGCCGGCGAGCGUGAa----CGCu -3'
miRNA:   3'- uauGCGGCCGUUCGCGCUacuugGCG- -5'
16999 5' -55.7 NC_004333.2 + 17498 0.7 0.415026
Target:  5'- --cCGCCGGCGgcGGCGCGA---ACgGCu -3'
miRNA:   3'- uauGCGGCCGU--UCGCGCUacuUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.