miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17000 3' -54 NC_004333.2 + 45401 0.96 0.012105
Target:  5'- cCGcUUCACGGUCGUGACGAACGCGACc -3'
miRNA:   3'- -GCaGAGUGCCAGCACUGCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 25662 0.78 0.200276
Target:  5'- gCGUCUUGcCGGcCGUcGCGAACGCGGCg -3'
miRNA:   3'- -GCAGAGU-GCCaGCAcUGCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 28223 0.75 0.281128
Target:  5'- gCGUCcgggcgcgUCACGGUgacCGUGACGcgcGCGCGGCg -3'
miRNA:   3'- -GCAG--------AGUGCCA---GCACUGCu--UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 28767 0.72 0.432417
Target:  5'- gCGUCgaccgCGCgGGUCGcGGCG-GCGCGACu -3'
miRNA:   3'- -GCAGa----GUG-CCAGCaCUGCuUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 31223 0.72 0.451948
Target:  5'- gGUCaugC-CGGUCGcGACGGccGCGCGGCg -3'
miRNA:   3'- gCAGa--GuGCCAGCaCUGCU--UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 2589 0.72 0.461893
Target:  5'- cCGUCcagGCGGUCGUGAaGGucgcccaauuGCGCGACa -3'
miRNA:   3'- -GCAGag-UGCCAGCACUgCU----------UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 19617 0.71 0.482121
Target:  5'- ---gUCACGGcgagCGcGGCGAGCGCGGCc -3'
miRNA:   3'- gcagAGUGCCa---GCaCUGCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 16650 0.71 0.511134
Target:  5'- uCGUCgacgaACuGGUCGUGACGcucgaacuagacGCGCGACa -3'
miRNA:   3'- -GCAGag---UG-CCAGCACUGCu-----------UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 5666 0.7 0.520615
Target:  5'- cCGUCUCGCGcGUCuucGAUGAucgucagcgcaucaGCGCGGCu -3'
miRNA:   3'- -GCAGAGUGC-CAGca-CUGCU--------------UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 4599 0.7 0.523791
Target:  5'- --aCUCGCGuUCGaGGCGAgcGCGCGACa -3'
miRNA:   3'- gcaGAGUGCcAGCaCUGCU--UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 42840 0.7 0.545141
Target:  5'- -aUC-CACGGcggCGUGACGAuccaGCGCGAa -3'
miRNA:   3'- gcAGaGUGCCa--GCACUGCU----UGCGCUg -5'
17000 3' -54 NC_004333.2 + 43428 0.7 0.555922
Target:  5'- aCG-CUCG-GGUCGggcUGACGGACGCGcGCa -3'
miRNA:   3'- -GCaGAGUgCCAGC---ACUGCUUGCGC-UG- -5'
17000 3' -54 NC_004333.2 + 11866 0.7 0.577661
Target:  5'- cCGUCUgC-CGGUCGgccgaaACGGGCGCGAg -3'
miRNA:   3'- -GCAGA-GuGCCAGCac----UGCUUGCGCUg -5'
17000 3' -54 NC_004333.2 + 37436 0.69 0.621609
Target:  5'- aCGUgUacuGCGG-CGUGACGAACGgcgcCGACa -3'
miRNA:   3'- -GCAgAg--UGCCaGCACUGCUUGC----GCUG- -5'
17000 3' -54 NC_004333.2 + 24732 0.68 0.643676
Target:  5'- cCGUCau-CGGUCGaGAagccgcucaCGAACGCGGCg -3'
miRNA:   3'- -GCAGaguGCCAGCaCU---------GCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 32967 0.68 0.654698
Target:  5'- cCGUCUgAccggccugcugcCGGcCGUGcggauuGCGAACGCGACc -3'
miRNA:   3'- -GCAGAgU------------GCCaGCAC------UGCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 35447 0.68 0.654698
Target:  5'- uGUUUaguGCGGUCGUGACcgucAACGuCGGCa -3'
miRNA:   3'- gCAGAg--UGCCAGCACUGc---UUGC-GCUG- -5'
17000 3' -54 NC_004333.2 + 33055 0.68 0.6657
Target:  5'- gCGUa--GCGGUCGgccACGAGCGCuGGCa -3'
miRNA:   3'- -GCAgagUGCCAGCac-UGCUUGCG-CUG- -5'
17000 3' -54 NC_004333.2 + 40521 0.68 0.67667
Target:  5'- aGUCgaaGCGGUCGUGaACGAAgucguCGCG-Cu -3'
miRNA:   3'- gCAGag-UGCCAGCAC-UGCUU-----GCGCuG- -5'
17000 3' -54 NC_004333.2 + 22885 0.67 0.698472
Target:  5'- uCGUaCUgGCGcUCGUGACGAgcagaaGCGCGGu -3'
miRNA:   3'- -GCA-GAgUGCcAGCACUGCU------UGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.