miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17000 3' -54 NC_004333.2 + 1024 0.67 0.720015
Target:  5'- gCGUCagAUGcGcaUCGggGACGAACGCGAUg -3'
miRNA:   3'- -GCAGagUGC-C--AGCa-CUGCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 2589 0.72 0.461893
Target:  5'- cCGUCcagGCGGUCGUGAaGGucgcccaauuGCGCGACa -3'
miRNA:   3'- -GCAGag-UGCCAGCACUgCU----------UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 4599 0.7 0.523791
Target:  5'- --aCUCGCGuUCGaGGCGAgcGCGCGACa -3'
miRNA:   3'- gcaGAGUGCcAGCaCUGCU--UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 5666 0.7 0.520615
Target:  5'- cCGUCUCGCGcGUCuucGAUGAucgucagcgcaucaGCGCGGCu -3'
miRNA:   3'- -GCAGAGUGC-CAGca-CUGCU--------------UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 6620 0.66 0.772136
Target:  5'- gCGUUgaagC-CGGUCGUGAgcauCGCGACg -3'
miRNA:   3'- -GCAGa---GuGCCAGCACUgcuuGCGCUG- -5'
17000 3' -54 NC_004333.2 + 9261 0.66 0.781174
Target:  5'- uCGUCUCGugcuuguUGGcCGUGcCGAucaGCGCGAa -3'
miRNA:   3'- -GCAGAGU-------GCCaGCACuGCU---UGCGCUg -5'
17000 3' -54 NC_004333.2 + 11866 0.7 0.577661
Target:  5'- cCGUCUgC-CGGUCGgccgaaACGGGCGCGAg -3'
miRNA:   3'- -GCAGA-GuGCCAGCac----UGCUUGCGCUg -5'
17000 3' -54 NC_004333.2 + 13350 0.66 0.782171
Target:  5'- -uUCggCACGGU-GU-ACGGGCGCGGCa -3'
miRNA:   3'- gcAGa-GUGCCAgCAcUGCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 15607 0.67 0.751643
Target:  5'- uCGUCggUCACGGUUucGGCGAACgucgugccguugGCGACc -3'
miRNA:   3'- -GCAG--AGUGCCAGcaCUGCUUG------------CGCUG- -5'
17000 3' -54 NC_004333.2 + 16650 0.71 0.511134
Target:  5'- uCGUCgacgaACuGGUCGUGACGcucgaacuagacGCGCGACa -3'
miRNA:   3'- -GCAGag---UG-CCAGCACUGCu-----------UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 17442 0.66 0.761956
Target:  5'- aCGUCgcccgggCAcCGGaUGUGGCGcAACGCGAa -3'
miRNA:   3'- -GCAGa------GU-GCCaGCACUGC-UUGCGCUg -5'
17000 3' -54 NC_004333.2 + 19560 0.67 0.713584
Target:  5'- gGUCgCACGGUCGgcGCGGcacaaggggaaucgcGCGCGAUc -3'
miRNA:   3'- gCAGaGUGCCAGCacUGCU---------------UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 19617 0.71 0.482121
Target:  5'- ---gUCACGGcgagCGcGGCGAGCGCGGCc -3'
miRNA:   3'- gcagAGUGCCa---GCaCUGCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 20212 0.66 0.792049
Target:  5'- gCGgCUCGCGcuuUCGUGGCGGcgaucgacCGCGACu -3'
miRNA:   3'- -GCaGAGUGCc--AGCACUGCUu-------GCGCUG- -5'
17000 3' -54 NC_004333.2 + 22885 0.67 0.698472
Target:  5'- uCGUaCUgGCGcUCGUGACGAgcagaaGCGCGGu -3'
miRNA:   3'- -GCA-GAgUGCcAGCACUGCU------UGCGCUg -5'
17000 3' -54 NC_004333.2 + 24732 0.68 0.643676
Target:  5'- cCGUCau-CGGUCGaGAagccgcucaCGAACGCGGCg -3'
miRNA:   3'- -GCAGaguGCCAGCaCU---------GCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 25662 0.78 0.200276
Target:  5'- gCGUCUUGcCGGcCGUcGCGAACGCGGCg -3'
miRNA:   3'- -GCAGAGU-GCCaGCAcUGCUUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 28223 0.75 0.281128
Target:  5'- gCGUCcgggcgcgUCACGGUgacCGUGACGcgcGCGCGGCg -3'
miRNA:   3'- -GCAG--------AGUGCCA---GCACUGCu--UGCGCUG- -5'
17000 3' -54 NC_004333.2 + 28767 0.72 0.432417
Target:  5'- gCGUCgaccgCGCgGGUCGcGGCG-GCGCGACu -3'
miRNA:   3'- -GCAGa----GUG-CCAGCaCUGCuUGCGCUG- -5'
17000 3' -54 NC_004333.2 + 28955 0.67 0.709281
Target:  5'- gCGUUguucaCGCGGUCGaacgcGGCGAucaguuGCGCGGCc -3'
miRNA:   3'- -GCAGa----GUGCCAGCa----CUGCU------UGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.