Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17000 | 5' | -60.3 | NC_004333.2 | + | 8982 | 0.69 | 0.296494 |
Target: 5'- gGGCCGUGcgCggCGGCgaccGACGcGGCg -3' miRNA: 3'- gCCGGCGCuaGa-GCCGaca-CUGC-CCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 40386 | 0.7 | 0.262347 |
Target: 5'- gCGGCCGacuCGAaCcCGGUUGaaGACGGGCa -3' miRNA: 3'- -GCCGGC---GCUaGaGCCGACa-CUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 45404 | 0.7 | 0.230883 |
Target: 5'- aGGCCGCagaccuggcacucGGUUUCGGCggcgGcGACGGcGCa -3' miRNA: 3'- gCCGGCG-------------CUAGAGCCGa---CaCUGCC-CG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 20556 | 0.66 | 0.456438 |
Target: 5'- cCGcGCCGCuGAUCgUCGGCgc-GuCGGGUc -3' miRNA: 3'- -GC-CGGCG-CUAG-AGCCGacaCuGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 5038 | 0.66 | 0.437472 |
Target: 5'- gCGGCCagGCGG-C-CGGCUGUuggccgacgucGGCGcGGCg -3' miRNA: 3'- -GCCGG--CGCUaGaGCCGACA-----------CUGC-CCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 22202 | 0.69 | 0.282436 |
Target: 5'- gCGGCUGCGGccugCUCGauGCcGaGACGGGCc -3' miRNA: 3'- -GCCGGCGCUa---GAGC--CGaCaCUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 21509 | 0.66 | 0.409893 |
Target: 5'- uGG-CGUGAUUUCa-CUGUcGACGGGCg -3' miRNA: 3'- gCCgGCGCUAGAGccGACA-CUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 28594 | 0.68 | 0.34994 |
Target: 5'- --aUCGCGGgucgCUCGGCUGcGACaGGCu -3' miRNA: 3'- gccGGCGCUa---GAGCCGACaCUGcCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 41839 | 0.67 | 0.374855 |
Target: 5'- cCGGCCGCGAg--CGGU-----CGGGCa -3' miRNA: 3'- -GCCGGCGCUagaGCCGacacuGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 47903 | 0.67 | 0.383423 |
Target: 5'- -cGCCGUGAccgugCUCGGCggcGUGACGaccacaucgaacGGCa -3' miRNA: 3'- gcCGGCGCUa----GAGCCGa--CACUGC------------CCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 31191 | 0.66 | 0.460284 |
Target: 5'- -uGCCGCGAguugcgcguucgguuUCUCGGCUGUaccGACGu-- -3' miRNA: 3'- gcCGGCGCU---------------AGAGCCGACA---CUGCccg -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 45435 | 1.11 | 0.000206 |
Target: 5'- gCGGCCGCGAUCUCGGCUGUGACGGGCa -3' miRNA: 3'- -GCCGGCGCUAGAGCCGACACUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 17854 | 0.66 | 0.456438 |
Target: 5'- gCGGCCGCGcgUaUGGCgggugGUGucGCaGGCg -3' miRNA: 3'- -GCCGGCGCuaGaGCCGa----CAC--UGcCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 5495 | 0.69 | 0.303725 |
Target: 5'- uCGGCCGgcguggagaCGAUCggcGCUGUuGCGGGCu -3' miRNA: 3'- -GCCGGC---------GCUAGagcCGACAcUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 17005 | 0.68 | 0.330871 |
Target: 5'- aCGGCgCGCcGUCUgGGCggcgaugccaaGGCGGGCg -3' miRNA: 3'- -GCCG-GCGcUAGAgCCGaca--------CUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 9276 | 0.68 | 0.333996 |
Target: 5'- uGGCCGUgccGAUCagcgcgaagCGGCgcgGgugcgcgGACGGGCg -3' miRNA: 3'- gCCGGCG---CUAGa--------GCCGa--Ca------CUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 39649 | 0.68 | 0.333996 |
Target: 5'- cCGGUCGCGcugUUCGGC----ACGGGCg -3' miRNA: 3'- -GCCGGCGCua-GAGCCGacacUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 849 | 0.66 | 0.456438 |
Target: 5'- -aGCUuCGAUCUCGGCUuucGUG-CGGcGCu -3' miRNA: 3'- gcCGGcGCUAGAGCCGA---CACuGCC-CG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 16820 | 0.68 | 0.344298 |
Target: 5'- gCGGCUGCGucgCUCGGCagcggucUGaUGaagcuggccggcauuGCGGGCg -3' miRNA: 3'- -GCCGGCGCua-GAGCCG-------AC-AC---------------UGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 3936 | 0.67 | 0.374855 |
Target: 5'- uGGCCGaCGAUCU--GCUucggGACGGGUu -3' miRNA: 3'- gCCGGC-GCUAGAgcCGAca--CUGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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