Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17000 | 5' | -60.3 | NC_004333.2 | + | 47903 | 0.67 | 0.383423 |
Target: 5'- -cGCCGUGAccgugCUCGGCggcGUGACGaccacaucgaacGGCa -3' miRNA: 3'- gcCGGCGCUa----GAGCCGa--CACUGC------------CCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 36204 | 0.67 | 0.374855 |
Target: 5'- aCGGCCGCGAUCgUCGacGCUGcGuGCaaGGCg -3' miRNA: 3'- -GCCGGCGCUAG-AGC--CGACaC-UGc-CCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 3936 | 0.67 | 0.374855 |
Target: 5'- uGGCCGaCGAUCU--GCUucggGACGGGUu -3' miRNA: 3'- gCCGGC-GCUAGAgcCGAca--CUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 16820 | 0.68 | 0.344298 |
Target: 5'- gCGGCUGCGucgCUCGGCagcggucUGaUGaagcuggccggcauuGCGGGCg -3' miRNA: 3'- -GCCGGCGCua-GAGCCG-------AC-AC---------------UGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 45192 | 0.68 | 0.341901 |
Target: 5'- cCGGCgaGCG-UCUaCGGCauuccguUGACGGGCg -3' miRNA: 3'- -GCCGg-CGCuAGA-GCCGac-----ACUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 39649 | 0.68 | 0.333996 |
Target: 5'- cCGGUCGCGcugUUCGGC----ACGGGCg -3' miRNA: 3'- -GCCGGCGCua-GAGCCGacacUGCCCG- -5' |
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17000 | 5' | -60.3 | NC_004333.2 | + | 24961 | 0.66 | 0.466085 |
Target: 5'- -cGCCGUGAUCaagacggCGGCggGU-ACGGGUa -3' miRNA: 3'- gcCGGCGCUAGa------GCCGa-CAcUGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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