Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17001 | 3' | -55.8 | NC_004333.2 | + | 24545 | 0.67 | 0.562896 |
Target: 5'- aGGCgaggACuucaaCGGCGCGUUGAaccaGGUCGc -3' miRNA: 3'- cCCGa---UGuc---GCCGUGCAACUg---CCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 18550 | 0.68 | 0.530584 |
Target: 5'- cGGGUgcgGCAGcCGGCGCGgcGGCGa--- -3' miRNA: 3'- -CCCGa--UGUC-GCCGUGCaaCUGCcagu -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 29309 | 0.69 | 0.488621 |
Target: 5'- uGGGCgcccCGGCGGCaauGCGUUGcgcACGG-CAa -3' miRNA: 3'- -CCCGau--GUCGCCG---UGCAAC---UGCCaGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 25113 | 0.69 | 0.488621 |
Target: 5'- cGGGC-ACGGCGaGCACGgcGGCGcG-CAc -3' miRNA: 3'- -CCCGaUGUCGC-CGUGCaaCUGC-CaGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 6585 | 0.69 | 0.482458 |
Target: 5'- uGGGCcgcagugcaaccagGCAGUcaacgaauGGCGCGUUGAagcCGGUCGu -3' miRNA: 3'- -CCCGa-------------UGUCG--------CCGUGCAACU---GCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 4211 | 0.69 | 0.478371 |
Target: 5'- uGGauuUGCAGCuGCGCGUUGACGcUCGa -3' miRNA: 3'- cCCg--AUGUCGcCGUGCAACUGCcAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 41579 | 0.69 | 0.458196 |
Target: 5'- cGGcGCUG-GGCGGCGCGccgUGGCGG-CGa -3' miRNA: 3'- -CC-CGAUgUCGCCGUGCa--ACUGCCaGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 13903 | 0.7 | 0.438485 |
Target: 5'- cGGGCUgcGCGGCGGCugcCG-UGGCGaUCGu -3' miRNA: 3'- -CCCGA--UGUCGCCGu--GCaACUGCcAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 27655 | 0.7 | 0.438485 |
Target: 5'- aGGCcGCcagcgAGCGGCGCGgcGGCGGcCGg -3' miRNA: 3'- cCCGaUG-----UCGCCGUGCaaCUGCCaGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 12708 | 0.7 | 0.428813 |
Target: 5'- cGGCccguugACGGUGcCgACGUUGACGGUCAc -3' miRNA: 3'- cCCGa-----UGUCGCcG-UGCAACUGCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 30673 | 0.7 | 0.400571 |
Target: 5'- cGGCUGCAGCaGguCGgu-GCGGUCGa -3' miRNA: 3'- cCCGAUGUCGcCguGCaacUGCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 44384 | 0.72 | 0.331322 |
Target: 5'- -cGCUGCucGGCGGCGCGUgcGCGGUaCAa -3' miRNA: 3'- ccCGAUG--UCGCCGUGCAacUGCCA-GU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 15497 | 0.73 | 0.292719 |
Target: 5'- aGGGCUGCucGCGGCGgucacCGgcGGCGcGUCAa -3' miRNA: 3'- -CCCGAUGu-CGCCGU-----GCaaCUGC-CAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 25836 | 0.74 | 0.244708 |
Target: 5'- aGGGU--CAGgGGCGCGUcaGGCGGUCGa -3' miRNA: 3'- -CCCGauGUCgCCGUGCAa-CUGCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 43330 | 0.74 | 0.23841 |
Target: 5'- cGGC-ACGGCGcGCGCGU--ACGGUCAg -3' miRNA: 3'- cCCGaUGUCGC-CGUGCAacUGCCAGU- -5' |
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17001 | 3' | -55.8 | NC_004333.2 | + | 45244 | 1.1 | 0.000612 |
Target: 5'- aGGGCUACAGCGGCACGUUGACGGUCAc -3' miRNA: 3'- -CCCGAUGUCGCCGUGCAACUGCCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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