miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 34659 0.68 0.588599
Target:  5'- cCGCgAGCACGUCggaCGGCgacCAGCugaAGCa -3'
miRNA:   3'- -GCG-UCGUGCAGa--GCCG---GUUGuagUCG- -5'
17001 5' -54.7 NC_004333.2 + 16559 0.68 0.570903
Target:  5'- aCGC-GCGCGgccacagCGGCCGagacggcgcuuaucaACGUCGGCa -3'
miRNA:   3'- -GCGuCGUGCaga----GCCGGU---------------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 25650 0.68 0.566498
Target:  5'- gCGCGGUcgaaaGCGUCUugcCGGCCGucGCGaacgCGGCg -3'
miRNA:   3'- -GCGUCG-----UGCAGA---GCCGGU--UGUa---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 5877 0.68 0.566498
Target:  5'- aCGCGaUACGcCUCGGUCGGCAccuugCGGCc -3'
miRNA:   3'- -GCGUcGUGCaGAGCCGGUUGUa----GUCG- -5'
17001 5' -54.7 NC_004333.2 + 2984 0.68 0.555526
Target:  5'- uCGUGGCGCGgacagCuGCCGcugcGCAUCAGCa -3'
miRNA:   3'- -GCGUCGUGCaga--GcCGGU----UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 39069 0.69 0.544616
Target:  5'- aGUAcGCGCGaCUCGugcGCCGuGCGUCGGCa -3'
miRNA:   3'- gCGU-CGUGCaGAGC---CGGU-UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 27842 0.69 0.533777
Target:  5'- uCGCGGUAccCGUCggcaCGGCCGGCA--AGCc -3'
miRNA:   3'- -GCGUCGU--GCAGa---GCCGGUUGUagUCG- -5'
17001 5' -54.7 NC_004333.2 + 14865 0.69 0.533777
Target:  5'- cCGUGGCGCGccgguuggcUCgaugCGGCCGACGcaacgcgcgcgcUCGGCu -3'
miRNA:   3'- -GCGUCGUGC---------AGa---GCCGGUUGU------------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 36905 0.69 0.533777
Target:  5'- gCGCGGCaACGcgaaCUCGGCC-GCAUUGGg -3'
miRNA:   3'- -GCGUCG-UGCa---GAGCCGGuUGUAGUCg -5'
17001 5' -54.7 NC_004333.2 + 9602 0.69 0.533777
Target:  5'- aGcCGGCGCGgcaUCGGCCGguugcGCAcCGGCu -3'
miRNA:   3'- gC-GUCGUGCag-AGCCGGU-----UGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 9010 0.69 0.533777
Target:  5'- gCGCAGCACGgg-CGGCaggaugucguCGAgAUCGGUg -3'
miRNA:   3'- -GCGUCGUGCagaGCCG----------GUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 11970 0.69 0.523015
Target:  5'- uGCAcGCGCGUCgacgaucgCGGCCGuAUcgCGGUg -3'
miRNA:   3'- gCGU-CGUGCAGa-------GCCGGU-UGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 45434 0.69 0.523015
Target:  5'- gGCGGcCGCGaUCUCGGCUGugAcgGGCa -3'
miRNA:   3'- gCGUC-GUGC-AGAGCCGGUugUagUCG- -5'
17001 5' -54.7 NC_004333.2 + 27891 0.69 0.523015
Target:  5'- gGCGGCAUcacUUCGGCCA---UCAGCg -3'
miRNA:   3'- gCGUCGUGca-GAGCCGGUuguAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 37373 0.69 0.512338
Target:  5'- aCGCGGUcuguGCGUCU--GCCAAauaGUCGGCa -3'
miRNA:   3'- -GCGUCG----UGCAGAgcCGGUUg--UAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 44973 0.69 0.512338
Target:  5'- gGCGGCGCGcCg-GGCCGGCucacCGGCc -3'
miRNA:   3'- gCGUCGUGCaGagCCGGUUGua--GUCG- -5'
17001 5' -54.7 NC_004333.2 + 42011 0.69 0.501752
Target:  5'- uCGguGCGCGUgaagCgcgCGGCCAACG--AGCg -3'
miRNA:   3'- -GCguCGUGCA----Ga--GCCGGUUGUagUCG- -5'
17001 5' -54.7 NC_004333.2 + 30926 0.69 0.501752
Target:  5'- uGCAGCGCGUcCUCaugcgcgggcaGGCCGGCuuugccuugCAGUa -3'
miRNA:   3'- gCGUCGUGCA-GAG-----------CCGGUUGua-------GUCG- -5'
17001 5' -54.7 NC_004333.2 + 27736 0.7 0.495447
Target:  5'- uCGCGGCGCGaaUCuggUCGGCCGccgagcccgucaggcGCAcguucgUCAGCa -3'
miRNA:   3'- -GCGUCGUGC--AG---AGCCGGU---------------UGU------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 39749 0.7 0.491263
Target:  5'- gGCAGaucaACGUCggCGGCaCcgUAUCGGCg -3'
miRNA:   3'- gCGUCg---UGCAGa-GCCG-GuuGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.