miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 416 0.67 0.655499
Target:  5'- gCGCGGCgAUGUgCUUGGCaca-GUCGGCc -3'
miRNA:   3'- -GCGUCG-UGCA-GAGCCGguugUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 13641 0.67 0.655499
Target:  5'- uGCAucGCGCGguaCUCGGgCAGCugcgcgagCAGCa -3'
miRNA:   3'- gCGU--CGUGCa--GAGCCgGUUGua------GUCG- -5'
17001 5' -54.7 NC_004333.2 + 19622 0.67 0.655499
Target:  5'- gGCgAGCGCGgcgagCgCGGCCGACGcUGGCc -3'
miRNA:   3'- gCG-UCGUGCa----GaGCCGGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 16953 0.67 0.648808
Target:  5'- gCGCGGC-CGUCgcgcCGGCaugaccaaccggcaAAUGUCGGCg -3'
miRNA:   3'- -GCGUCGuGCAGa---GCCGg-------------UUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 45968 0.67 0.644344
Target:  5'- uCGCGGCGaggcguggUGUCcCGGCCuGCcacUCGGCg -3'
miRNA:   3'- -GCGUCGU--------GCAGaGCCGGuUGu--AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 15607 0.67 0.644344
Target:  5'- uCGuCGGuCACgGUUUCGGCgAACGUCGuGCc -3'
miRNA:   3'- -GC-GUC-GUG-CAGAGCCGgUUGUAGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 14295 0.67 0.644344
Target:  5'- cCGCAcCGCuGUCgcuGGCCGAC-UCGGCu -3'
miRNA:   3'- -GCGUcGUG-CAGag-CCGGUUGuAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 1263 0.67 0.633177
Target:  5'- uCGCGGCGC-UCgCGGCgcugCAGCAUgaaCAGCa -3'
miRNA:   3'- -GCGUCGUGcAGaGCCG----GUUGUA---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 47252 0.67 0.63206
Target:  5'- uCGCAGCACaGUCagccgcuccggauUCGGCUucugucgcGCAauUCGGCa -3'
miRNA:   3'- -GCGUCGUG-CAG-------------AGCCGGu-------UGU--AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 31602 0.67 0.622009
Target:  5'- aCGUugauaAGCGcCGUCUCGGCCGcugugGCcgCGcGCg -3'
miRNA:   3'- -GCG-----UCGU-GCAGAGCCGGU-----UGuaGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 35024 0.67 0.622009
Target:  5'- uGCucaAGCcgACGUaUUCGuucGCCGGCAUCAGCa -3'
miRNA:   3'- gCG---UCG--UGCA-GAGC---CGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 5481 0.67 0.622009
Target:  5'- aCGCcGCcCGcUCgUCGGCCGGCGuggagacgaUCGGCg -3'
miRNA:   3'- -GCGuCGuGC-AG-AGCCGGUUGU---------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 28355 0.67 0.622009
Target:  5'- aCGCAGgGa-UCg-GGCCGGCAUCGGUc -3'
miRNA:   3'- -GCGUCgUgcAGagCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 2272 0.67 0.622009
Target:  5'- gCGCAGCGCGUUU--GCC---GUCGGCa -3'
miRNA:   3'- -GCGUCGUGCAGAgcCGGuugUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 26482 0.67 0.620893
Target:  5'- gCGCauagAGCGCGUCgagcugcUCGGCCGucAUAUCuucgAGCa -3'
miRNA:   3'- -GCG----UCGUGCAG-------AGCCGGU--UGUAG----UCG- -5'
17001 5' -54.7 NC_004333.2 + 25842 0.68 0.61085
Target:  5'- aGgGGCGCGUCaggCGGUCGAUgcgaAUCuGCa -3'
miRNA:   3'- gCgUCGUGCAGa--GCCGGUUG----UAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 18213 0.68 0.59971
Target:  5'- gGCAGCGCGgccgcgCUCGGCaCGcgcuuuucgcGCAUUuucgaAGCg -3'
miRNA:   3'- gCGUCGUGCa-----GAGCCG-GU----------UGUAG-----UCG- -5'
17001 5' -54.7 NC_004333.2 + 11890 0.68 0.59971
Target:  5'- gCGCgAGCACcuuGUCgucgCGGcCCGGCAUgcgCAGCg -3'
miRNA:   3'- -GCG-UCGUG---CAGa---GCC-GGUUGUA---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 28768 0.68 0.59971
Target:  5'- gGUAGCGCGgCguaGGCgUAgcGCAUCAGCa -3'
miRNA:   3'- gCGUCGUGCaGag-CCG-GU--UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 40765 0.68 0.59971
Target:  5'- gCGCcGCGCGUCgaaGGCaagGACA-CGGCg -3'
miRNA:   3'- -GCGuCGUGCAGag-CCGg--UUGUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.