miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 33047 0.66 0.688788
Target:  5'- cCGCAcGUGCGUagcggUCGGCCAcgaGCgcuggcaacucgGUCAGCg -3'
miRNA:   3'- -GCGU-CGUGCAg----AGCCGGU---UG------------UAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 32285 0.66 0.688788
Target:  5'- gCGCGGguCGg--CGGCgAugucgacguGCGUCAGCa -3'
miRNA:   3'- -GCGUCguGCagaGCCGgU---------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 675 0.66 0.688788
Target:  5'- uGUA-CugGUCgcgcCGGCCGGCGccucguUCAGCg -3'
miRNA:   3'- gCGUcGugCAGa---GCCGGUUGU------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 15413 0.66 0.688788
Target:  5'- aGguGcCGCG-CUuaUGGCCGGCggCAGCg -3'
miRNA:   3'- gCguC-GUGCaGA--GCCGGUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 12127 0.66 0.677733
Target:  5'- aGCGGCACGagCUCGccGUCGugGUCguAGCc -3'
miRNA:   3'- gCGUCGUGCa-GAGC--CGGUugUAG--UCG- -5'
17001 5' -54.7 NC_004333.2 + 42649 0.66 0.677733
Target:  5'- uCGCAGCGucuccCGUCgagCaGCCcGCAaCAGCg -3'
miRNA:   3'- -GCGUCGU-----GCAGa--GcCGGuUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 23857 0.66 0.677733
Target:  5'- gGgGGCGCauUCUCGGUCggUcgCGGCu -3'
miRNA:   3'- gCgUCGUGc-AGAGCCGGuuGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 8370 0.66 0.677733
Target:  5'- gGUAuGCGCGUUcggaCGGCCAcagcgcgagcgGCGUCGGUc -3'
miRNA:   3'- gCGU-CGUGCAGa---GCCGGU-----------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 1507 0.66 0.675516
Target:  5'- gCGCgAGCgacgGCGagUCGGCCugcagcgugauCGUCAGCg -3'
miRNA:   3'- -GCG-UCG----UGCagAGCCGGuu---------GUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 45166 0.67 0.666633
Target:  5'- uCGCGcGCuACGUCgCGGCgGACGcgcCGGCg -3'
miRNA:   3'- -GCGU-CG-UGCAGaGCCGgUUGUa--GUCG- -5'
17001 5' -54.7 NC_004333.2 + 43122 0.67 0.666633
Target:  5'- gCGCcGCGcCGaCgUCGGCCAACAgcCGGCc -3'
miRNA:   3'- -GCGuCGU-GCaG-AGCCGGUUGUa-GUCG- -5'
17001 5' -54.7 NC_004333.2 + 32543 0.67 0.666633
Target:  5'- gCGCGGCGCG-CUCGcGUCGAUcaCuGCg -3'
miRNA:   3'- -GCGUCGUGCaGAGC-CGGUUGuaGuCG- -5'
17001 5' -54.7 NC_004333.2 + 12293 0.67 0.666633
Target:  5'- gGCGuGCGCGUCgcaacgGGCCGGC-UCuGCu -3'
miRNA:   3'- gCGU-CGUGCAGag----CCGGUUGuAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 4882 0.67 0.666633
Target:  5'- -uCGGCACGagCgcauagcCGGCCGGgAUCGGCg -3'
miRNA:   3'- gcGUCGUGCa-Ga------GCCGGUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 19142 0.67 0.666633
Target:  5'- gGCGGCGCGgugCUCGcGCUggUuAUCGuGCu -3'
miRNA:   3'- gCGUCGUGCa--GAGC-CGGuuG-UAGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 45695 0.67 0.666633
Target:  5'- gGCAGCGucgauCGUCUCGaaCAACG-CGGCu -3'
miRNA:   3'- gCGUCGU-----GCAGAGCcgGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 11804 0.67 0.666633
Target:  5'- gCGCaAGUACGaCgCGGCCA---UCAGCg -3'
miRNA:   3'- -GCG-UCGUGCaGaGCCGGUuguAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 27696 0.67 0.666633
Target:  5'- uGCAGCgagACGUCguaGGUCAAguUCGGg -3'
miRNA:   3'- gCGUCG---UGCAGag-CCGGUUguAGUCg -5'
17001 5' -54.7 NC_004333.2 + 12096 0.67 0.665521
Target:  5'- gCGCAGCgccGCGUCacgGGCCAGCucgucguAUCGGa -3'
miRNA:   3'- -GCGUCG---UGCAGag-CCGGUUG-------UAGUCg -5'
17001 5' -54.7 NC_004333.2 + 28401 0.67 0.662183
Target:  5'- gCGCGGCACGaUCccgugcguuggagCGGCCGaucGCGUCguugacGGCa -3'
miRNA:   3'- -GCGUCGUGC-AGa------------GCCGGU---UGUAG------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.