miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 27148 0.66 0.721571
Target:  5'- aGCAGCACugcgCGGCCAcuuCGUC-GCc -3'
miRNA:   3'- gCGUCGUGcagaGCCGGUu--GUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 34318 0.66 0.699787
Target:  5'- nCGCGGCGCG-CUCaaugcGCuCGACG-CGGCg -3'
miRNA:   3'- -GCGUCGUGCaGAGc----CG-GUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 27781 0.66 0.721571
Target:  5'- aGCGGCGCGgccaCUgCGGCCA----CGGCc -3'
miRNA:   3'- gCGUCGUGCa---GA-GCCGGUuguaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 19629 0.66 0.721571
Target:  5'- uCGaCAGCACGUg-CGauGCCGggaaugcacGCGUCGGCg -3'
miRNA:   3'- -GC-GUCGUGCAgaGC--CGGU---------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 1413 0.66 0.699787
Target:  5'- aGCAGCGCGgcggacacUUCGacGCCGaguGCGUCGGUc -3'
miRNA:   3'- gCGUCGUGCa-------GAGC--CGGU---UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 46140 0.66 0.695395
Target:  5'- gCGCGG-GCGUCgacgugaucgaugCGGCCGugACGUCGGg -3'
miRNA:   3'- -GCGUCgUGCAGa------------GCCGGU--UGUAGUCg -5'
17001 5' -54.7 NC_004333.2 + 15413 0.66 0.688788
Target:  5'- aGguGcCGCG-CUuaUGGCCGGCggCAGCg -3'
miRNA:   3'- gCguC-GUGCaGA--GCCGGUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 675 0.66 0.688788
Target:  5'- uGUA-CugGUCgcgcCGGCCGGCGccucguUCAGCg -3'
miRNA:   3'- gCGUcGugCAGa---GCCGGUUGU------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 23857 0.66 0.677733
Target:  5'- gGgGGCGCauUCUCGGUCggUcgCGGCu -3'
miRNA:   3'- gCgUCGUGc-AGAGCCGGuuGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 13641 0.67 0.655499
Target:  5'- uGCAucGCGCGguaCUCGGgCAGCugcgcgagCAGCa -3'
miRNA:   3'- gCGU--CGUGCa--GAGCCgGUUGua------GUCG- -5'
17001 5' -54.7 NC_004333.2 + 11804 0.67 0.666633
Target:  5'- gCGCaAGUACGaCgCGGCCA---UCAGCg -3'
miRNA:   3'- -GCG-UCGUGCaGaGCCGGUuguAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 35024 0.67 0.622009
Target:  5'- uGCucaAGCcgACGUaUUCGuucGCCGGCAUCAGCa -3'
miRNA:   3'- gCG---UCG--UGCA-GAGC---CGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 12096 0.67 0.665521
Target:  5'- gCGCAGCgccGCGUCacgGGCCAGCucgucguAUCGGa -3'
miRNA:   3'- -GCGUCG---UGCAGag-CCGGUUG-------UAGUCg -5'
17001 5' -54.7 NC_004333.2 + 28401 0.67 0.662183
Target:  5'- gCGCGGCACGaUCccgugcguuggagCGGCCGaucGCGUCguugacGGCa -3'
miRNA:   3'- -GCGUCGUGC-AGa------------GCCGGU---UGUAG------UCG- -5'
17001 5' -54.7 NC_004333.2 + 416 0.67 0.655499
Target:  5'- gCGCGGCgAUGUgCUUGGCaca-GUCGGCc -3'
miRNA:   3'- -GCGUCG-UGCA-GAGCCGguugUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 16953 0.67 0.648808
Target:  5'- gCGCGGC-CGUCgcgcCGGCaugaccaaccggcaAAUGUCGGCg -3'
miRNA:   3'- -GCGUCGuGCAGa---GCCGg-------------UUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 14295 0.67 0.644344
Target:  5'- cCGCAcCGCuGUCgcuGGCCGAC-UCGGCu -3'
miRNA:   3'- -GCGUcGUG-CAGag-CCGGUUGuAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 1263 0.67 0.633177
Target:  5'- uCGCGGCGC-UCgCGGCgcugCAGCAUgaaCAGCa -3'
miRNA:   3'- -GCGUCGUGcAGaGCCG----GUUGUA---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 28355 0.67 0.622009
Target:  5'- aCGCAGgGa-UCg-GGCCGGCAUCGGUc -3'
miRNA:   3'- -GCGUCgUgcAGagCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 5481 0.67 0.622009
Target:  5'- aCGCcGCcCGcUCgUCGGCCGGCGuggagacgaUCGGCg -3'
miRNA:   3'- -GCGuCGuGC-AG-AGCCGGUUGU---------AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.