miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 13621 0.65 0.729114
Target:  5'- gCGCGGCgauuguggucggcaACGUUUCuaccggGGCCAGCA-CGGUu -3'
miRNA:   3'- -GCGUCG--------------UGCAGAG------CCGGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 44899 0.65 0.73126
Target:  5'- gCGcCAGCugaugagcuGCGUCUCGaugcgucgcgcgcGCCGAagaaGUCGGCa -3'
miRNA:   3'- -GC-GUCG---------UGCAGAGC-------------CGGUUg---UAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 27781 0.66 0.721571
Target:  5'- aGCGGCGCGgccaCUgCGGCCA----CGGCc -3'
miRNA:   3'- gCGUCGUGCa---GA-GCCGGUuguaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 32369 0.66 0.688788
Target:  5'- gCGCAGCACGacgUUCaGcGCCG-CGUCGGg -3'
miRNA:   3'- -GCGUCGUGCa--GAG-C-CGGUuGUAGUCg -5'
17001 5' -54.7 NC_004333.2 + 32285 0.66 0.688788
Target:  5'- gCGCGGguCGg--CGGCgAugucgacguGCGUCAGCa -3'
miRNA:   3'- -GCGUCguGCagaGCCGgU---------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 42649 0.66 0.677733
Target:  5'- uCGCAGCGucuccCGUCgagCaGCCcGCAaCAGCg -3'
miRNA:   3'- -GCGUCGU-----GCAGa--GcCGGuUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 12127 0.66 0.677733
Target:  5'- aGCGGCACGagCUCGccGUCGugGUCguAGCc -3'
miRNA:   3'- gCGUCGUGCa-GAGC--CGGUugUAG--UCG- -5'
17001 5' -54.7 NC_004333.2 + 1507 0.66 0.675516
Target:  5'- gCGCgAGCgacgGCGagUCGGCCugcagcgugauCGUCAGCg -3'
miRNA:   3'- -GCG-UCG----UGCagAGCCGGuu---------GUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 8370 0.66 0.677733
Target:  5'- gGUAuGCGCGUUcggaCGGCCAcagcgcgagcgGCGUCGGUc -3'
miRNA:   3'- gCGU-CGUGCAGa---GCCGGU-----------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 23857 0.66 0.677733
Target:  5'- gGgGGCGCauUCUCGGUCggUcgCGGCu -3'
miRNA:   3'- gCgUCGUGc-AGAGCCGGuuGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 675 0.66 0.688788
Target:  5'- uGUA-CugGUCgcgcCGGCCGGCGccucguUCAGCg -3'
miRNA:   3'- gCGUcGugCAGa---GCCGGUUGU------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 15413 0.66 0.688788
Target:  5'- aGguGcCGCG-CUuaUGGCCGGCggCAGCg -3'
miRNA:   3'- gCguC-GUGCaGA--GCCGGUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 19629 0.66 0.721571
Target:  5'- uCGaCAGCACGUg-CGauGCCGggaaugcacGCGUCGGCg -3'
miRNA:   3'- -GC-GUCGUGCAgaGC--CGGU---------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 1413 0.66 0.699787
Target:  5'- aGCAGCGCGgcggacacUUCGacGCCGaguGCGUCGGUc -3'
miRNA:   3'- gCGUCGUGCa-------GAGC--CGGU---UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 34318 0.66 0.699787
Target:  5'- nCGCGGCGCG-CUCaaugcGCuCGACG-CGGCg -3'
miRNA:   3'- -GCGUCGUGCaGAGc----CG-GUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 9636 0.66 0.699787
Target:  5'- cCGUgAGCGCGUCggaCGGCaacGCGUC-GCa -3'
miRNA:   3'- -GCG-UCGUGCAGa--GCCGgu-UGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 13143 0.66 0.709629
Target:  5'- gGaCAGCGCGUCacgccgaugguguUCGGCgCGAC--CGGCa -3'
miRNA:   3'- gC-GUCGUGCAG-------------AGCCG-GUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 17879 0.66 0.710719
Target:  5'- uCGCAGgCGCGaCggCGGCCAGC-UC-GCc -3'
miRNA:   3'- -GCGUC-GUGCaGa-GCCGGUUGuAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 10005 0.66 0.721571
Target:  5'- gGCGGCcauugcgaGCGg--CGuGCCAAgAUCGGCg -3'
miRNA:   3'- gCGUCG--------UGCagaGC-CGGUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 27148 0.66 0.721571
Target:  5'- aGCAGCACugcgCGGCCAcuuCGUC-GCc -3'
miRNA:   3'- gCGUCGUGcagaGCCGGUu--GUAGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.