miRNA display CGI


Results 1 - 20 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 277 0.73 0.300381
Target:  5'- cCGCcgAGCACgGUCaCGGUCGACGUCuGCg -3'
miRNA:   3'- -GCG--UCGUG-CAGaGCCGGUUGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 416 0.67 0.655499
Target:  5'- gCGCGGCgAUGUgCUUGGCaca-GUCGGCc -3'
miRNA:   3'- -GCGUCG-UGCA-GAGCCGguugUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 675 0.66 0.688788
Target:  5'- uGUA-CugGUCgcgcCGGCCGGCGccucguUCAGCg -3'
miRNA:   3'- gCGUcGugCAGa---GCCGGUUGU------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 1007 0.7 0.440459
Target:  5'- gGCAGCGCGuUCUU--CCGGCGUCAGa -3'
miRNA:   3'- gCGUCGUGC-AGAGccGGUUGUAGUCg -5'
17001 5' -54.7 NC_004333.2 + 1263 0.67 0.633177
Target:  5'- uCGCGGCGC-UCgCGGCgcugCAGCAUgaaCAGCa -3'
miRNA:   3'- -GCGUCGUGcAGaGCCG----GUUGUA---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 1413 0.66 0.699787
Target:  5'- aGCAGCGCGgcggacacUUCGacGCCGaguGCGUCGGUc -3'
miRNA:   3'- gCGUCGUGCa-------GAGC--CGGU---UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 1507 0.66 0.675516
Target:  5'- gCGCgAGCgacgGCGagUCGGCCugcagcgugauCGUCAGCg -3'
miRNA:   3'- -GCG-UCG----UGCagAGCCGGuu---------GUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 1693 0.66 0.699787
Target:  5'- uGCAGUAcauCGUCgagUUGGCCGugGUCAa- -3'
miRNA:   3'- gCGUCGU---GCAG---AGCCGGUugUAGUcg -5'
17001 5' -54.7 NC_004333.2 + 2067 0.74 0.278282
Target:  5'- cCGUAGCGCGcaccgcgCUCGGCCAAgGUU-GCg -3'
miRNA:   3'- -GCGUCGUGCa------GAGCCGGUUgUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 2272 0.67 0.622009
Target:  5'- gCGCAGCGCGUUU--GCC---GUCGGCa -3'
miRNA:   3'- -GCGUCGUGCAGAgcCGGuugUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 2677 0.74 0.292867
Target:  5'- gGCAGCuugcaGCGUCgcgccggcggCGGCCGACAggccgaucucgUCGGCg -3'
miRNA:   3'- gCGUCG-----UGCAGa---------GCCGGUUGU-----------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 2984 0.68 0.555526
Target:  5'- uCGUGGCGCGgacagCuGCCGcugcGCAUCAGCa -3'
miRNA:   3'- -GCGUCGUGCaga--GcCGGU----UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 3325 0.76 0.219754
Target:  5'- gCGCGGCgaucuucuucaGCGUCUcgCGGCCAGCGUCGu- -3'
miRNA:   3'- -GCGUCG-----------UGCAGA--GCCGGUUGUAGUcg -5'
17001 5' -54.7 NC_004333.2 + 3561 0.73 0.319018
Target:  5'- gCGCAGCGCG--UCGGCCGaccacauagugcgccACAUCgcGGCg -3'
miRNA:   3'- -GCGUCGUGCagAGCCGGU---------------UGUAG--UCG- -5'
17001 5' -54.7 NC_004333.2 + 4220 0.66 0.699787
Target:  5'- aGCuGCGCGUUgacGCUcgagAACAUCGGCg -3'
miRNA:   3'- gCGuCGUGCAGagcCGG----UUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 4882 0.67 0.666633
Target:  5'- -uCGGCACGagCgcauagcCGGCCGGgAUCGGCg -3'
miRNA:   3'- gcGUCGUGCa-Ga------GCCGGUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 5045 0.78 0.145612
Target:  5'- gGCGGC-CGgcugUUGGCCGACGUCGGCg -3'
miRNA:   3'- gCGUCGuGCag--AGCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 5424 0.66 0.688788
Target:  5'- uCGCGGCAgCGUC---GUCGGCAUCuGCg -3'
miRNA:   3'- -GCGUCGU-GCAGagcCGGUUGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 5481 0.67 0.622009
Target:  5'- aCGCcGCcCGcUCgUCGGCCGGCGuggagacgaUCGGCg -3'
miRNA:   3'- -GCGuCGuGC-AG-AGCCGGUUGU---------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 5877 0.68 0.566498
Target:  5'- aCGCGaUACGcCUCGGUCGGCAccuugCGGCc -3'
miRNA:   3'- -GCGUcGUGCaGAGCCGGUUGUa----GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.