miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 44961 0.81 0.094983
Target:  5'- gCGCGcGCACGUCggCGGCCGACugCAGCa -3'
miRNA:   3'- -GCGU-CGUGCAGa-GCCGGUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 6653 0.72 0.356266
Target:  5'- gGCAGCGCG-CUCGGCgCGcucgagcaggcgcGCAUCcGCc -3'
miRNA:   3'- gCGUCGUGCaGAGCCG-GU-------------UGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 20601 0.71 0.420986
Target:  5'- uGCAgGCGCGgCUCGGCCucGCG-CAGUc -3'
miRNA:   3'- gCGU-CGUGCaGAGCCGGu-UGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 44899 0.65 0.73126
Target:  5'- gCGcCAGCugaugagcuGCGUCUCGaugcgucgcgcgcGCCGAagaaGUCGGCa -3'
miRNA:   3'- -GC-GUCG---------UGCAGAGC-------------CGGUUg---UAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 16847 0.79 0.126105
Target:  5'- aGCAGCGCGUCgCGGCCAaggcgaucgacggGCGacuguUCGGCa -3'
miRNA:   3'- gCGUCGUGCAGaGCCGGU-------------UGU-----AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 5045 0.78 0.145612
Target:  5'- gGCGGC-CGgcugUUGGCCGACGUCGGCg -3'
miRNA:   3'- gCGUCGuGCag--AGCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 15282 0.75 0.238
Target:  5'- uGCuGCgGCGgcgCGGUCAGCAUCAGCa -3'
miRNA:   3'- gCGuCG-UGCagaGCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 32136 0.74 0.285501
Target:  5'- gCGcCAGCACGUCgaacgCGGCgAcUGUCGGCa -3'
miRNA:   3'- -GC-GUCGUGCAGa----GCCGgUuGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 277 0.73 0.300381
Target:  5'- cCGCcgAGCACgGUCaCGGUCGACGUCuGCg -3'
miRNA:   3'- -GCG--UCGUG-CAGaGCCGGUUGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 47958 0.72 0.348577
Target:  5'- gGCGcGCugGUCgUCGGCgu-CAUCGGCg -3'
miRNA:   3'- gCGU-CGugCAG-AGCCGguuGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 3561 0.73 0.319018
Target:  5'- gCGCAGCGCG--UCGGCCGaccacauagugcgccACAUCgcGGCg -3'
miRNA:   3'- -GCGUCGUGCagAGCCGGU---------------UGUAG--UCG- -5'
17001 5' -54.7 NC_004333.2 + 2677 0.74 0.292867
Target:  5'- gGCAGCuugcaGCGUCgcgccggcggCGGCCGACAggccgaucucgUCGGCg -3'
miRNA:   3'- gCGUCG-----UGCAGa---------GCCGGUUGU-----------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 33875 0.81 0.097763
Target:  5'- uGCAGC-CGagUCGGCCAGCGaCAGCg -3'
miRNA:   3'- gCGUCGuGCagAGCCGGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 33290 0.73 0.323812
Target:  5'- aGCGcGCGCGUUgcgUCGGCC-GCAUCgAGCc -3'
miRNA:   3'- gCGU-CGUGCAG---AGCCGGuUGUAG-UCG- -5'
17001 5' -54.7 NC_004333.2 + 31250 0.8 0.112852
Target:  5'- gCGCAGCGcCGUCUCGGUguuCGUCAGUg -3'
miRNA:   3'- -GCGUCGU-GCAGAGCCGguuGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 25518 0.74 0.285501
Target:  5'- gGCcgAGCGCGUCUUGGUacgcgccgcuCGAgGUCAGCg -3'
miRNA:   3'- gCG--UCGUGCAGAGCCG----------GUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 28974 0.72 0.340174
Target:  5'- aCGCGGCGaucaGUUgcgCGGCCGccGgGUCGGCg -3'
miRNA:   3'- -GCGUCGUg---CAGa--GCCGGU--UgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 25941 0.72 0.38365
Target:  5'- gCGCGGCGCGaugCcggCGGCCAguACG-CGGCg -3'
miRNA:   3'- -GCGUCGUGCa--Ga--GCCGGU--UGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 46195 0.8 0.112852
Target:  5'- gGCugGGCGCGUCUCGcGCCGG-AUCAGCg -3'
miRNA:   3'- gCG--UCGUGCAGAGC-CGGUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 37373 0.75 0.225099
Target:  5'- uGCAcCGCGUCgcgCGGCCGuccucaucguccuACGUCGGCg -3'
miRNA:   3'- gCGUcGUGCAGa--GCCGGU-------------UGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.