miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 15519 0.7 0.480877
Target:  5'- gGCGGCGCGUCaa-GCgCGAUGUUAGCg -3'
miRNA:   3'- gCGUCGUGCAGagcCG-GUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 20601 0.71 0.420986
Target:  5'- uGCAgGCGCGgCUCGGCCucGCG-CAGUc -3'
miRNA:   3'- gCGU-CGUGCaGAGCCGGu-UGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 2677 0.74 0.292867
Target:  5'- gGCAGCuugcaGCGUCgcgccggcggCGGCCGACAggccgaucucgUCGGCg -3'
miRNA:   3'- gCGUCG-----UGCAGa---------GCCGGUUGU-----------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 46195 0.8 0.112852
Target:  5'- gGCugGGCGCGUCUCGcGCCGG-AUCAGCg -3'
miRNA:   3'- gCG--UCGUGCAGAGC-CGGUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 31602 0.67 0.622009
Target:  5'- aCGUugauaAGCGcCGUCUCGGCCGcugugGCcgCGcGCg -3'
miRNA:   3'- -GCG-----UCGU-GCAGAGCCGGU-----UGuaGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 27891 0.69 0.523015
Target:  5'- gGCGGCAUcacUUCGGCCA---UCAGCg -3'
miRNA:   3'- gCGUCGUGca-GAGCCGGUuguAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 6653 0.72 0.356266
Target:  5'- gGCAGCGCG-CUCGGCgCGcucgagcaggcgcGCAUCcGCc -3'
miRNA:   3'- gCGUCGUGCaGAGCCG-GU-------------UGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 31250 0.8 0.112852
Target:  5'- gCGCAGCGcCGUCUCGGUguuCGUCAGUg -3'
miRNA:   3'- -GCGUCGU-GCAGAGCCGguuGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 11970 0.69 0.523015
Target:  5'- uGCAcGCGCGUCgacgaucgCGGCCGuAUcgCGGUg -3'
miRNA:   3'- gCGU-CGUGCAGa-------GCCGGU-UGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 33875 0.81 0.097763
Target:  5'- uGCAGC-CGagUCGGCCAGCGaCAGCg -3'
miRNA:   3'- gCGUCGuGCagAGCCGGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 25941 0.72 0.38365
Target:  5'- gCGCGGCGCGaugCcggCGGCCAguACG-CGGCg -3'
miRNA:   3'- -GCGUCGUGCa--Ga--GCCGGU--UGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 24128 0.7 0.491263
Target:  5'- uCGCAGCGCGcaauguUCgCGGCCGccuucACGagCAGCa -3'
miRNA:   3'- -GCGUCGUGC------AGaGCCGGU-----UGUa-GUCG- -5'
17001 5' -54.7 NC_004333.2 + 33290 0.73 0.323812
Target:  5'- aGCGcGCGCGUUgcgUCGGCC-GCAUCgAGCc -3'
miRNA:   3'- gCGU-CGUGCAG---AGCCGGuUGUAG-UCG- -5'
17001 5' -54.7 NC_004333.2 + 277 0.73 0.300381
Target:  5'- cCGCcgAGCACgGUCaCGGUCGACGUCuGCg -3'
miRNA:   3'- -GCG--UCGUG-CAGaGCCGGUUGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 15282 0.75 0.238
Target:  5'- uGCuGCgGCGgcgCGGUCAGCAUCAGCa -3'
miRNA:   3'- gCGuCG-UGCagaGCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 16847 0.79 0.126105
Target:  5'- aGCAGCGCGUCgCGGCCAaggcgaucgacggGCGacuguUCGGCa -3'
miRNA:   3'- gCGUCGUGCAGaGCCGGU-------------UGU-----AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 19622 0.67 0.655499
Target:  5'- gGCgAGCGCGgcgagCgCGGCCGACGcUGGCc -3'
miRNA:   3'- gCG-UCGUGCa----GaGCCGGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 47252 0.67 0.63206
Target:  5'- uCGCAGCACaGUCagccgcuccggauUCGGCUucugucgcGCAauUCGGCa -3'
miRNA:   3'- -GCGUCGUG-CAG-------------AGCCGGu-------UGU--AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 11890 0.68 0.59971
Target:  5'- gCGCgAGCACcuuGUCgucgCGGcCCGGCAUgcgCAGCg -3'
miRNA:   3'- -GCG-UCGUG---CAGa---GCC-GGUUGUA---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 9602 0.69 0.533777
Target:  5'- aGcCGGCGCGgcaUCGGCCGguugcGCAcCGGCu -3'
miRNA:   3'- gC-GUCGUGCag-AGCCGGU-----UGUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.