miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 29677 0.74 0.292867
Target:  5'- uGCAGCGucCGUCggCGuGCCGGCAaCGGCg -3'
miRNA:   3'- gCGUCGU--GCAGa-GC-CGGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 277 0.73 0.300381
Target:  5'- cCGCcgAGCACgGUCaCGGUCGACGUCuGCg -3'
miRNA:   3'- -GCG--UCGUG-CAGaGCCGGUUGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 32477 0.73 0.300381
Target:  5'- cCGCAGCAUGUaacCGGaCAACAcCAGCg -3'
miRNA:   3'- -GCGUCGUGCAga-GCCgGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 9756 0.73 0.305729
Target:  5'- aCGCGGCAagcgucucgaucgcCGUCUugaccgUGGCCGGCGUCAcGCc -3'
miRNA:   3'- -GCGUCGU--------------GCAGA------GCCGGUUGUAGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 3561 0.73 0.319018
Target:  5'- gCGCAGCGCG--UCGGCCGaccacauagugcgccACAUCgcGGCg -3'
miRNA:   3'- -GCGUCGUGCagAGCCGGU---------------UGUAG--UCG- -5'
17001 5' -54.7 NC_004333.2 + 33290 0.73 0.323812
Target:  5'- aGCGcGCGCGUUgcgUCGGCC-GCAUCgAGCc -3'
miRNA:   3'- gCGU-CGUGCAG---AGCCGGuUGUAG-UCG- -5'
17001 5' -54.7 NC_004333.2 + 34289 0.73 0.323812
Target:  5'- gCGCAGCcCGUgC-CGGCCGACuucgcgCGGCg -3'
miRNA:   3'- -GCGUCGuGCA-GaGCCGGUUGua----GUCG- -5'
17001 5' -54.7 NC_004333.2 + 28974 0.72 0.340174
Target:  5'- aCGCGGCGaucaGUUgcgCGGCCGccGgGUCGGCg -3'
miRNA:   3'- -GCGUCGUg---CAGa--GCCGGU--UgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 47958 0.72 0.348577
Target:  5'- gGCGcGCugGUCgUCGGCgu-CAUCGGCg -3'
miRNA:   3'- gCGU-CGugCAG-AGCCGguuGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 6653 0.72 0.356266
Target:  5'- gGCAGCGCG-CUCGGCgCGcucgagcaggcgcGCAUCcGCc -3'
miRNA:   3'- gCGUCGUGCaGAGCCG-GU-------------UGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 36306 0.72 0.374665
Target:  5'- uCGC-GCcCGUUUCGGCCGAC--CGGCa -3'
miRNA:   3'- -GCGuCGuGCAGAGCCGGUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 22656 0.72 0.374665
Target:  5'- aGCGGCGCGUaccaagacgcgCUCGGCC-GCAUCu-- -3'
miRNA:   3'- gCGUCGUGCA-----------GAGCCGGuUGUAGucg -5'
17001 5' -54.7 NC_004333.2 + 9819 0.72 0.382745
Target:  5'- gCGaCAGCGCGUCgaucaguUCGGCUucgGUCGGCa -3'
miRNA:   3'- -GC-GUCGUGCAG-------AGCCGGuugUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 25941 0.72 0.38365
Target:  5'- gCGCGGCGCGaugCcggCGGCCAguACG-CGGCg -3'
miRNA:   3'- -GCGUCGUGCa--Ga--GCCGGU--UGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 29370 0.72 0.38365
Target:  5'- aGCAGCACG-CgcccugCGGCCGcgcgauaagcGCGguUCAGCg -3'
miRNA:   3'- gCGUCGUGCaGa-----GCCGGU----------UGU--AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 10449 0.71 0.392776
Target:  5'- gCGCAgGCGCGgcagCUU-GCCGACAUCgAGCa -3'
miRNA:   3'- -GCGU-CGUGCa---GAGcCGGUUGUAG-UCG- -5'
17001 5' -54.7 NC_004333.2 + 9146 0.71 0.392776
Target:  5'- aCGaAGCGCGUuuuugcCUCGGCgAACAgcugCAGCg -3'
miRNA:   3'- -GCgUCGUGCA------GAGCCGgUUGUa---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 30677 0.71 0.402043
Target:  5'- uGCAGCAgGUCggugCGGUCGaguGCGagCAGCg -3'
miRNA:   3'- gCGUCGUgCAGa---GCCGGU---UGUa-GUCG- -5'
17001 5' -54.7 NC_004333.2 + 20601 0.71 0.420986
Target:  5'- uGCAgGCGCGgCUCGGCCucGCG-CAGUc -3'
miRNA:   3'- gCGU-CGUGCaGAGCCGGu-UGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 1007 0.7 0.440459
Target:  5'- gGCAGCGCGuUCUU--CCGGCGUCAGa -3'
miRNA:   3'- gCGUCGUGC-AGAGccGGUUGUAGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.