miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 6653 0.72 0.356266
Target:  5'- gGCAGCGCG-CUCGGCgCGcucgagcaggcgcGCAUCcGCc -3'
miRNA:   3'- gCGUCGUGCaGAGCCG-GU-------------UGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 6826 0.66 0.699787
Target:  5'- gGCGGCAC-UC-CGGCgGGgcacuCGUCGGCu -3'
miRNA:   3'- gCGUCGUGcAGaGCCGgUU-----GUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 8305 0.66 0.721571
Target:  5'- gGCGGCGCGcggggCUCGcGCCccgcuauGCGUUAcGCg -3'
miRNA:   3'- gCGUCGUGCa----GAGC-CGGu------UGUAGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 8370 0.66 0.677733
Target:  5'- gGUAuGCGCGUUcggaCGGCCAcagcgcgagcgGCGUCGGUc -3'
miRNA:   3'- gCGU-CGUGCAGa---GCCGGU-----------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 8955 0.78 0.145612
Target:  5'- aGCAuuGCACGcagCUCGGCCGACGggAGCg -3'
miRNA:   3'- gCGU--CGUGCa--GAGCCGGUUGUagUCG- -5'
17001 5' -54.7 NC_004333.2 + 9010 0.69 0.533777
Target:  5'- gCGCAGCACGgg-CGGCaggaugucguCGAgAUCGGUg -3'
miRNA:   3'- -GCGUCGUGCagaGCCG----------GUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 9146 0.71 0.392776
Target:  5'- aCGaAGCGCGUuuuugcCUCGGCgAACAgcugCAGCg -3'
miRNA:   3'- -GCgUCGUGCA------GAGCCGgUUGUa---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 9602 0.69 0.533777
Target:  5'- aGcCGGCGCGgcaUCGGCCGguugcGCAcCGGCu -3'
miRNA:   3'- gC-GUCGUGCag-AGCCGGU-----UGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 9636 0.66 0.699787
Target:  5'- cCGUgAGCGCGUCggaCGGCaacGCGUC-GCa -3'
miRNA:   3'- -GCG-UCGUGCAGa--GCCGgu-UGUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 9756 0.73 0.305729
Target:  5'- aCGCGGCAagcgucucgaucgcCGUCUugaccgUGGCCGGCGUCAcGCc -3'
miRNA:   3'- -GCGUCGU--------------GCAGA------GCCGGUUGUAGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 9819 0.72 0.382745
Target:  5'- gCGaCAGCGCGUCgaucaguUCGGCUucgGUCGGCa -3'
miRNA:   3'- -GC-GUCGUGCAG-------AGCCGGuugUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 10005 0.66 0.721571
Target:  5'- gGCGGCcauugcgaGCGg--CGuGCCAAgAUCGGCg -3'
miRNA:   3'- gCGUCG--------UGCagaGC-CGGUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 10449 0.71 0.392776
Target:  5'- gCGCAgGCGCGgcagCUU-GCCGACAUCgAGCa -3'
miRNA:   3'- -GCGU-CGUGCa---GAGcCGGUUGUAG-UCG- -5'
17001 5' -54.7 NC_004333.2 + 11804 0.67 0.666633
Target:  5'- gCGCaAGUACGaCgCGGCCA---UCAGCg -3'
miRNA:   3'- -GCG-UCGUGCaGaGCCGGUuguAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 11890 0.68 0.59971
Target:  5'- gCGCgAGCACcuuGUCgucgCGGcCCGGCAUgcgCAGCg -3'
miRNA:   3'- -GCG-UCGUG---CAGa---GCC-GGUUGUA---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 11970 0.69 0.523015
Target:  5'- uGCAcGCGCGUCgacgaucgCGGCCGuAUcgCGGUg -3'
miRNA:   3'- gCGU-CGUGCAGa-------GCCGGU-UGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 12096 0.67 0.665521
Target:  5'- gCGCAGCgccGCGUCacgGGCCAGCucgucguAUCGGa -3'
miRNA:   3'- -GCGUCG---UGCAGag-CCGGUUG-------UAGUCg -5'
17001 5' -54.7 NC_004333.2 + 12127 0.66 0.677733
Target:  5'- aGCGGCACGagCUCGccGUCGugGUCguAGCc -3'
miRNA:   3'- gCGUCGUGCa-GAGC--CGGUugUAG--UCG- -5'
17001 5' -54.7 NC_004333.2 + 12293 0.67 0.666633
Target:  5'- gGCGuGCGCGUCgcaacgGGCCGGC-UCuGCu -3'
miRNA:   3'- gCGU-CGUGCAGag----CCGGUUGuAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 13143 0.66 0.709629
Target:  5'- gGaCAGCGCGUCacgccgaugguguUCGGCgCGAC--CGGCa -3'
miRNA:   3'- gC-GUCGUGCAG-------------AGCCG-GUUGuaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.