miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 45279 1.11 0.000686
Target:  5'- gCGCAGCACGUCUCGGCCAACAUCAGCc -3'
miRNA:   3'- -GCGUCGUGCAGAGCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 44961 0.81 0.094983
Target:  5'- gCGCGcGCACGUCggCGGCCGACugCAGCa -3'
miRNA:   3'- -GCGU-CGUGCAGa-GCCGGUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 33875 0.81 0.097763
Target:  5'- uGCAGC-CGagUCGGCCAGCGaCAGCg -3'
miRNA:   3'- gCGUCGuGCagAGCCGGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 46195 0.8 0.112852
Target:  5'- gGCugGGCGCGUCUCGcGCCGG-AUCAGCg -3'
miRNA:   3'- gCG--UCGUGCAGAGC-CGGUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 31250 0.8 0.112852
Target:  5'- gCGCAGCGcCGUCUCGGUguuCGUCAGUg -3'
miRNA:   3'- -GCGUCGU-GCAGAGCCGguuGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 16847 0.79 0.126105
Target:  5'- aGCAGCGCGUCgCGGCCAaggcgaucgacggGCGacuguUCGGCa -3'
miRNA:   3'- gCGUCGUGCAGaGCCGGU-------------UGU-----AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 8955 0.78 0.145612
Target:  5'- aGCAuuGCACGcagCUCGGCCGACGggAGCg -3'
miRNA:   3'- gCGU--CGUGCa--GAGCCGGUUGUagUCG- -5'
17001 5' -54.7 NC_004333.2 + 5045 0.78 0.145612
Target:  5'- gGCGGC-CGgcugUUGGCCGACGUCGGCg -3'
miRNA:   3'- gCGUCGuGCag--AGCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 30142 0.78 0.147253
Target:  5'- gGCAGCGCGaucagcgcguagaaCUCGGCCGGCuucGUCGGCu -3'
miRNA:   3'- gCGUCGUGCa-------------GAGCCGGUUG---UAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 27667 0.77 0.181789
Target:  5'- aGCGGCGCGgcggCGGCCGGCAgcgguugcgCGGCa -3'
miRNA:   3'- gCGUCGUGCaga-GCCGGUUGUa--------GUCG- -5'
17001 5' -54.7 NC_004333.2 + 25963 0.76 0.192002
Target:  5'- uGCGGCcCGUCUCGGCaucgagcaGGCcgCAGCc -3'
miRNA:   3'- gCGUCGuGCAGAGCCGg-------UUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 28530 0.76 0.219754
Target:  5'- cCGUGGCGagcUGUUgaCGGCCAGCGUCGGCc -3'
miRNA:   3'- -GCGUCGU---GCAGa-GCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 3325 0.76 0.219754
Target:  5'- gCGCGGCgaucuucuucaGCGUCUcgCGGCCAGCGUCGu- -3'
miRNA:   3'- -GCGUCG-----------UGCAGA--GCCGGUUGUAGUcg -5'
17001 5' -54.7 NC_004333.2 + 37373 0.75 0.225099
Target:  5'- uGCAcCGCGUCgcgCGGCCGuccucaucguccuACGUCGGCg -3'
miRNA:   3'- gCGUcGUGCAGa--GCCGGU-------------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 43291 0.75 0.225699
Target:  5'- uCGCAGCGCGcgCUacaUGGUCAGCGgcggCAGCg -3'
miRNA:   3'- -GCGUCGUGCa-GA---GCCGGUUGUa---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 15282 0.75 0.238
Target:  5'- uGCuGCgGCGgcgCGGUCAGCAUCAGCa -3'
miRNA:   3'- gCGuCG-UGCagaGCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 2067 0.74 0.278282
Target:  5'- cCGUAGCGCGcaccgcgCUCGGCCAAgGUU-GCg -3'
miRNA:   3'- -GCGUCGUGCa------GAGCCGGUUgUAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 32136 0.74 0.285501
Target:  5'- gCGcCAGCACGUCgaacgCGGCgAcUGUCGGCa -3'
miRNA:   3'- -GC-GUCGUGCAGa----GCCGgUuGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 25518 0.74 0.285501
Target:  5'- gGCcgAGCGCGUCUUGGUacgcgccgcuCGAgGUCAGCg -3'
miRNA:   3'- gCG--UCGUGCAGAGCCG----------GUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 29677 0.74 0.292867
Target:  5'- uGCAGCGucCGUCggCGuGCCGGCAaCGGCg -3'
miRNA:   3'- gCGUCGU--GCAGa-GC-CGGUUGUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.