miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 47958 0.72 0.348577
Target:  5'- gGCGcGCugGUCgUCGGCgu-CAUCGGCg -3'
miRNA:   3'- gCGU-CGugCAG-AGCCGguuGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 47252 0.67 0.63206
Target:  5'- uCGCAGCACaGUCagccgcuccggauUCGGCUucugucgcGCAauUCGGCa -3'
miRNA:   3'- -GCGUCGUG-CAG-------------AGCCGGu-------UGU--AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 46611 0.7 0.440459
Target:  5'- uCGaCGGCACGUUgUCGGCCGGCuUCGuGUu -3'
miRNA:   3'- -GC-GUCGUGCAG-AGCCGGUUGuAGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 46195 0.8 0.112852
Target:  5'- gGCugGGCGCGUCUCGcGCCGG-AUCAGCg -3'
miRNA:   3'- gCG--UCGUGCAGAGC-CGGUUgUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 46140 0.66 0.695395
Target:  5'- gCGCGG-GCGUCgacgugaucgaugCGGCCGugACGUCGGg -3'
miRNA:   3'- -GCGUCgUGCAGa------------GCCGGU--UGUAGUCg -5'
17001 5' -54.7 NC_004333.2 + 45968 0.67 0.644344
Target:  5'- uCGCGGCGaggcguggUGUCcCGGCCuGCcacUCGGCg -3'
miRNA:   3'- -GCGUCGU--------GCAGaGCCGGuUGu--AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 45695 0.67 0.666633
Target:  5'- gGCAGCGucgauCGUCUCGaaCAACG-CGGCu -3'
miRNA:   3'- gCGUCGU-----GCAGAGCcgGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 45449 0.7 0.450385
Target:  5'- uCGCgAGCAUGg--CGGCCAACuaCGGCg -3'
miRNA:   3'- -GCG-UCGUGCagaGCCGGUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 45434 0.69 0.523015
Target:  5'- gGCGGcCGCGaUCUCGGCUGugAcgGGCa -3'
miRNA:   3'- gCGUC-GUGC-AGAGCCGGUugUagUCG- -5'
17001 5' -54.7 NC_004333.2 + 45279 1.11 0.000686
Target:  5'- gCGCAGCACGUCUCGGCCAACAUCAGCc -3'
miRNA:   3'- -GCGUCGUGCAGAGCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 45166 0.67 0.666633
Target:  5'- uCGCGcGCuACGUCgCGGCgGACGcgcCGGCg -3'
miRNA:   3'- -GCGU-CG-UGCAGaGCCGgUUGUa--GUCG- -5'
17001 5' -54.7 NC_004333.2 + 44973 0.69 0.512338
Target:  5'- gGCGGCGCGcCg-GGCCGGCucacCGGCc -3'
miRNA:   3'- gCGUCGUGCaGagCCGGUUGua--GUCG- -5'
17001 5' -54.7 NC_004333.2 + 44961 0.81 0.094983
Target:  5'- gCGCGcGCACGUCggCGGCCGACugCAGCa -3'
miRNA:   3'- -GCGU-CGUGCAGa-GCCGGUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 44899 0.65 0.73126
Target:  5'- gCGcCAGCugaugagcuGCGUCUCGaugcgucgcgcgcGCCGAagaaGUCGGCa -3'
miRNA:   3'- -GC-GUCG---------UGCAGAGC-------------CGGUUg---UAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 43291 0.75 0.225699
Target:  5'- uCGCAGCGCGcgCUacaUGGUCAGCGgcggCAGCg -3'
miRNA:   3'- -GCGUCGUGCa-GA---GCCGGUUGUa---GUCG- -5'
17001 5' -54.7 NC_004333.2 + 43122 0.67 0.666633
Target:  5'- gCGCcGCGcCGaCgUCGGCCAACAgcCGGCc -3'
miRNA:   3'- -GCGuCGU-GCaG-AGCCGGUUGUa-GUCG- -5'
17001 5' -54.7 NC_004333.2 + 42649 0.66 0.677733
Target:  5'- uCGCAGCGucuccCGUCgagCaGCCcGCAaCAGCg -3'
miRNA:   3'- -GCGUCGU-----GCAGa--GcCGGuUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 42011 0.69 0.501752
Target:  5'- uCGguGCGCGUgaagCgcgCGGCCAACG--AGCg -3'
miRNA:   3'- -GCguCGUGCA----Ga--GCCGGUUGUagUCG- -5'
17001 5' -54.7 NC_004333.2 + 40765 0.68 0.59971
Target:  5'- gCGCcGCGCGUCgaaGGCaagGACA-CGGCg -3'
miRNA:   3'- -GCGuCGUGCAGag-CCGg--UUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 39749 0.7 0.491263
Target:  5'- gGCAGaucaACGUCggCGGCaCcgUAUCGGCg -3'
miRNA:   3'- gCGUCg---UGCAGa-GCCG-GuuGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.