miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17001 5' -54.7 NC_004333.2 + 13621 0.65 0.729114
Target:  5'- gCGCGGCgauuguggucggcaACGUUUCuaccggGGCCAGCA-CGGUu -3'
miRNA:   3'- -GCGUCG--------------UGCAGAG------CCGGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 13641 0.67 0.655499
Target:  5'- uGCAucGCGCGguaCUCGGgCAGCugcgcgagCAGCa -3'
miRNA:   3'- gCGU--CGUGCa--GAGCCgGUUGua------GUCG- -5'
17001 5' -54.7 NC_004333.2 + 13880 0.7 0.480877
Target:  5'- gCGCcGCGCGaagUCGGCCGGCAcgGGCu -3'
miRNA:   3'- -GCGuCGUGCag-AGCCGGUUGUagUCG- -5'
17001 5' -54.7 NC_004333.2 + 14295 0.67 0.644344
Target:  5'- cCGCAcCGCuGUCgcuGGCCGAC-UCGGCu -3'
miRNA:   3'- -GCGUcGUG-CAGag-CCGGUUGuAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 14865 0.69 0.533777
Target:  5'- cCGUGGCGCGccgguuggcUCgaugCGGCCGACGcaacgcgcgcgcUCGGCu -3'
miRNA:   3'- -GCGUCGUGC---------AGa---GCCGGUUGU------------AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 15282 0.75 0.238
Target:  5'- uGCuGCgGCGgcgCGGUCAGCAUCAGCa -3'
miRNA:   3'- gCGuCG-UGCagaGCCGGUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 15413 0.66 0.688788
Target:  5'- aGguGcCGCG-CUuaUGGCCGGCggCAGCg -3'
miRNA:   3'- gCguC-GUGCaGA--GCCGGUUGuaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 15519 0.7 0.480877
Target:  5'- gGCGGCGCGUCaa-GCgCGAUGUUAGCg -3'
miRNA:   3'- gCGUCGUGCAGagcCG-GUUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 15607 0.67 0.644344
Target:  5'- uCGuCGGuCACgGUUUCGGCgAACGUCGuGCc -3'
miRNA:   3'- -GC-GUC-GUG-CAGAGCCGgUUGUAGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 16559 0.68 0.570903
Target:  5'- aCGC-GCGCGgccacagCGGCCGagacggcgcuuaucaACGUCGGCa -3'
miRNA:   3'- -GCGuCGUGCaga----GCCGGU---------------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 16835 0.7 0.450385
Target:  5'- gGCAGCG-GUCUgaugaagcUGGCCGGCAUUgcgGGCg -3'
miRNA:   3'- gCGUCGUgCAGA--------GCCGGUUGUAG---UCG- -5'
17001 5' -54.7 NC_004333.2 + 16847 0.79 0.126105
Target:  5'- aGCAGCGCGUCgCGGCCAaggcgaucgacggGCGacuguUCGGCa -3'
miRNA:   3'- gCGUCGUGCAGaGCCGGU-------------UGU-----AGUCG- -5'
17001 5' -54.7 NC_004333.2 + 16953 0.67 0.648808
Target:  5'- gCGCGGC-CGUCgcgcCGGCaugaccaaccggcaAAUGUCGGCg -3'
miRNA:   3'- -GCGUCGuGCAGa---GCCGg-------------UUGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 17879 0.66 0.710719
Target:  5'- uCGCAGgCGCGaCggCGGCCAGC-UC-GCc -3'
miRNA:   3'- -GCGUC-GUGCaGa-GCCGGUUGuAGuCG- -5'
17001 5' -54.7 NC_004333.2 + 18213 0.68 0.59971
Target:  5'- gGCAGCGCGgccgcgCUCGGCaCGcgcuuuucgcGCAUUuucgaAGCg -3'
miRNA:   3'- gCGUCGUGCa-----GAGCCG-GU----------UGUAG-----UCG- -5'
17001 5' -54.7 NC_004333.2 + 19142 0.67 0.666633
Target:  5'- gGCGGCGCGgugCUCGcGCUggUuAUCGuGCu -3'
miRNA:   3'- gCGUCGUGCa--GAGC-CGGuuG-UAGU-CG- -5'
17001 5' -54.7 NC_004333.2 + 19622 0.67 0.655499
Target:  5'- gGCgAGCGCGgcgagCgCGGCCGACGcUGGCc -3'
miRNA:   3'- gCG-UCGUGCa----GaGCCGGUUGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 19629 0.66 0.721571
Target:  5'- uCGaCAGCACGUg-CGauGCCGggaaugcacGCGUCGGCg -3'
miRNA:   3'- -GC-GUCGUGCAgaGC--CGGU---------UGUAGUCG- -5'
17001 5' -54.7 NC_004333.2 + 20601 0.71 0.420986
Target:  5'- uGCAgGCGCGgCUCGGCCucGCG-CAGUc -3'
miRNA:   3'- gCGU-CGUGCaGAGCCGGu-UGUaGUCG- -5'
17001 5' -54.7 NC_004333.2 + 22656 0.72 0.374665
Target:  5'- aGCGGCGCGUaccaagacgcgCUCGGCC-GCAUCu-- -3'
miRNA:   3'- gCGUCGUGCA-----------GAGCCGGuUGUAGucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.